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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 116.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 150.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 47.5
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 127.8
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 149.7
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 84.8
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 106.2
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 65.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 89.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 142.4
Min RPKM: 24.6
Std RPKM: 24.8
Median RPKM: 93.5
GTEX-ZTSS-1526-SM-51MTC
142.4
GTEX-111VG-1926-SM-5GIDO
139.8
GTEX-11NV4-1726-SM-5N9FC
136.7
GTEX-11EQ9-1926-SM-5PNVV
133.7
GTEX-13OVL-0426-SM-5IFG6
131.8
GTEX-Y111-2426-SM-4TT23
131.0
GTEX-ZQUD-2026-SM-51MSM
130.7
GTEX-13FHP-2826-SM-5IJFW
130.0
GTEX-13VXU-0726-SM-5J2O7
128.1
GTEX-14ABY-0626-SM-5Q5C9
125.5
GTEX-139TT-2226-SM-5LZWO
125.0
GTEX-WK11-0326-SM-4OOS6
124.5
GTEX-ZV7C-2026-SM-5NQ8F
124.5
GTEX-OOBK-2126-SM-3LK5T
124.4
GTEX-132QS-1226-SM-5P9GD
123.4
GTEX-11WQC-2326-SM-5EQKE
123.1
GTEX-145MH-2326-SM-5O9AW
122.5
GTEX-ZPU1-2126-SM-57WED
121.9
GTEX-11TUW-2226-SM-5EQL9
121.9
GTEX-XBEC-0126-SM-4GIDT
121.1
GTEX-ZVTK-0126-SM-57WDG
120.9
GTEX-ZYT6-2726-SM-5GICP
120.8
GTEX-11LCK-2326-SM-5HL53
120.6
GTEX-OIZH-2126-SM-3NB1P
120.6
GTEX-11ZUS-2726-SM-5FQUA
120.2
GTEX-ZYFC-0126-SM-5GIEH
119.4
GTEX-11DXZ-2126-SM-59881
118.7
GTEX-V1D1-2126-SM-4JBH4
118.6
GTEX-144GM-0426-SM-5Q5C8
117.5
GTEX-ZDYS-1326-SM-5IJFF
116.9
GTEX-OXRL-2126-SM-3NM98
116.4
GTEX-117YW-1526-SM-5EGGP
115.1
GTEX-REY6-0126-SM-48FDT
114.9
GTEX-ZT9W-2226-SM-57WFU
114.3
GTEX-X5EB-2026-SM-4E3KA
112.5
GTEX-Q2AI-1226-SM-48U14
112.3
GTEX-11OF3-1826-SM-5987N
111.8
GTEX-13N1W-2626-SM-5IJEP
111.6
GTEX-139TS-1726-SM-5IJG5
111.2
GTEX-12ZZY-0126-SM-5LZV2
110.5
GTEX-T6MN-2026-SM-4DM7L
110.4
GTEX-117XS-2026-SM-5GID1
110.2
GTEX-XGQ4-2026-SM-4AT6G
110.1
GTEX-R55E-0726-SM-48FCZ
110.0
GTEX-TKQ1-0926-SM-4DXU2
109.5
GTEX-WH7G-1926-SM-4LVMM
107.8
GTEX-11GS4-2026-SM-5N9CP
107.4
GTEX-N7MS-0126-SM-3TW8O
107.0
GTEX-QEG4-0126-SM-48TZE
106.4
GTEX-ZZ64-1126-SM-5GZXY
106.1
GTEX-13112-0226-SM-5P9IV
105.6
GTEX-14753-0626-SM-5Q5CY
105.5
GTEX-RM2N-1326-SM-48FCW
105.4
GTEX-1212Z-0326-SM-5FQSJ
105.2
GTEX-ZVZP-2226-SM-57WBF
104.7
GTEX-11NSD-1026-SM-5N9BE
104.3
GTEX-111CU-1726-SM-5EGHM
104.3
GTEX-TKQ2-1526-SM-4DXUN
103.9
GTEX-11NUK-2626-SM-5A5MB
103.8
GTEX-QV31-1126-SM-4R1K4
103.3
GTEX-145MO-0126-SM-5S2QU
102.7
GTEX-147JS-0126-SM-5S2TW
102.5
GTEX-YEC4-1526-SM-4W1YU
101.9
GTEX-111YS-2026-SM-5EGGL
101.3
GTEX-S7SE-0326-SM-4AT5Q
100.9
GTEX-SNOS-1126-SM-4DM67
99.8
GTEX-YFCO-1726-SM-4W21S
98.3
GTEX-S7PM-0626-SM-4AD4Q
98.0
GTEX-12C56-1426-SM-5FQSW
98.0
GTEX-13NZB-2026-SM-5MR4M
97.6
GTEX-XBED-2026-SM-4AT5D
97.6
GTEX-OHPM-2126-SM-3LK75
97.6
GTEX-T8EM-0126-SM-4DM5R
97.5
GTEX-XQ3S-2726-SM-4BOP2
97.3
GTEX-WHSB-2126-SM-4M1XF
96.5
GTEX-Z93S-1726-SM-5HL8G
96.2
GTEX-SNMC-1026-SM-4DM7K
96.0
GTEX-XLM4-1526-SM-4AT6D
96.0
GTEX-13FLW-2126-SM-5N9FD
95.5
GTEX-144GL-0726-SM-5LU4P
95.2
GTEX-X3Y1-2626-SM-4PQZI
94.3
GTEX-13O61-2026-SM-5J2M6
94.2
GTEX-XMK1-2026-SM-4B65K
93.9
GTEX-YEC3-1726-SM-5IFIK
93.9
GTEX-13NZA-2526-SM-5IJFX
93.8
GTEX-S3XE-1526-SM-4AD5A
93.7
GTEX-RUSQ-2126-SM-47JXK
93.4
GTEX-PW2O-1426-SM-48TCD
93.0
GTEX-11EI6-2226-SM-5EGJM
93.0
GTEX-11P82-1526-SM-5BC5M
92.9
GTEX-Y5V6-1726-SM-4VDSZ
92.5
GTEX-SUCS-1326-SM-4DM5T
92.3
GTEX-WZTO-0326-SM-4PQYZ
92.0
GTEX-OOBJ-2126-SM-3NB1N
90.9
GTEX-R55C-1426-SM-48FED
90.6
GTEX-12WSH-0326-SM-5GCNH
90.3
GTEX-UPJH-0126-SM-4IHLL
89.4
GTEX-12WSL-2326-SM-5DUXQ
88.7
GTEX-QLQW-1026-SM-447A9
87.6
GTEX-ZUA1-2726-SM-59HLJ
87.6
GTEX-13OW5-2526-SM-5L3I1
87.5
GTEX-Q2AH-1526-SM-48TZG
87.2
GTEX-13111-1526-SM-5EGJX
86.4
GTEX-U4B1-1526-SM-4DXSL
86.1
GTEX-ZA64-1626-SM-5CVME
85.8
GTEX-ZAB5-2426-SM-5CVMW
85.8
GTEX-QMRM-1526-SM-4R1K6
83.1
GTEX-U3ZM-1626-SM-4DXSK
82.9
GTEX-S95S-1126-SM-4B64E
82.8
GTEX-111FC-1926-SM-5GZYC
82.7
GTEX-13OW6-0126-SM-5IJGM
81.9
GTEX-12WSI-2126-SM-5GCMV
81.8
GTEX-11O72-0726-SM-5P9GO
81.4
GTEX-12696-0226-SM-5EGL3
81.3
GTEX-13N2G-0126-SM-5N9DV
81.1
GTEX-U8T8-1126-SM-4DXUE
80.7
GTEX-WOFM-1126-SM-4OOSB
80.4
GTEX-13NYB-2226-SM-5MR58
80.3
GTEX-U3ZH-1526-SM-4DXV1
79.6
GTEX-139T6-1226-SM-5IFFC
79.6
GTEX-WFG8-1926-SM-4LVM1
79.5
GTEX-131XE-0426-SM-5IJF4
79.3
GTEX-XAJ8-1326-SM-47JYT
78.8
GTEX-11EQ8-1426-SM-5EGJR
78.7
GTEX-145LT-0426-SM-5LUAP
78.6
GTEX-13O21-1226-SM-5J2MK
77.9
GTEX-QEG5-0126-SM-4R1JR
76.2
GTEX-U8XE-0126-SM-4E3I3
76.0
GTEX-P4QS-2126-SM-3NMCF
75.0
GTEX-YJ89-0626-SM-4TT3Z
74.5
GTEX-RWSA-2426-SM-47JXR
74.3
GTEX-13O1R-0726-SM-5IJEI
74.2
GTEX-RN64-2326-SM-48FDW
74.2
GTEX-XPT6-1626-SM-4B655
74.1
GTEX-R55D-0126-SM-48FEL
72.1
GTEX-S4Q7-1226-SM-4AD5I
71.5
GTEX-YF7O-2026-SM-4W1YE
71.3
GTEX-WVLH-2626-SM-4MVNV
70.5
GTEX-V955-1926-SM-4KL1L
70.1
GTEX-ZTX8-1126-SM-51MRM
70.1
GTEX-S33H-0126-SM-4AD62
69.7
GTEX-VJYA-1426-SM-4KL1Y
68.3
GTEX-X261-2326-SM-4PQYU
66.5
GTEX-12WSM-1326-SM-5GCP9
66.1
GTEX-1399R-1626-SM-5P9GG
65.3
GTEX-O5YT-2126-SM-3MJGD
65.2
GTEX-T5JC-0726-SM-4DM55
64.3
GTEX-YB5E-1926-SM-5IFIG
63.2
GTEX-ZT9X-1426-SM-5DUX1
62.7
GTEX-QLQ7-1426-SM-4R1JX
62.2
GTEX-11TT1-2226-SM-5GU6B
58.3
GTEX-144GN-1626-SM-5Q5BU
57.2
GTEX-11P7K-1026-SM-5HL6Y
56.5
GTEX-Y9LG-1726-SM-4VBQE
55.3
GTEX-QV44-1726-SM-4R1KG
54.6
GTEX-13OVH-0726-SM-5N9BU
53.5
GTEX-14A6H-2326-SM-5Q5B5
52.4
GTEX-11ONC-2226-SM-5HL6D
51.0
GTEX-PLZ5-1526-SM-3P5ZX
49.9
GTEX-P4QR-0226-SM-3NMCH
48.6
GTEX-13FTW-1326-SM-5LZZD
46.7
GTEX-ZDTT-2026-SM-5K7TY
46.4
GTEX-XPVG-2226-SM-4B65U
45.3
GTEX-WFON-2026-SM-4LVMW
44.1
GTEX-NFK9-0126-SM-3LK5H
43.3
GTEX-1339X-1926-SM-5PNVP
43.0
GTEX-OIZI-0126-SM-3NB13
40.9
GTEX-Y8E4-2226-SM-5LU94
38.3
GTEX-ZAB4-0126-SM-5CVMG
37.7
GTEX-147F4-0626-SM-5LUAK
36.5
GTEX-11WQK-2826-SM-5EQKH
35.8
GTEX-1399Q-2826-SM-5IJEZ
24.6
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.