SMG1

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:11.8 FPKM
GTEx:8.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA006870

 

Antibody HPA031623

 

Endothelial cells

Medium   Low  

Glandular cells

Medium   High  

Peripheral nerve/ganglion

Medium   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

11.8

overview Male, age 54
Sample 1
FPKM: 11.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 15.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 15.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 9.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 12.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 6.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 11.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

8.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 8.9
Samples: 149

Max RPKM: 15.9
Min RPKM: 3.9
Std RPKM: 1.9
Median RPKM: 8.5
GTEX-132AR-2826-SM-5IJFV 15.9
GTEX-11WQK-2526-SM-5CVL8 15.3
GTEX-ZAJG-2626-SM-5S2NU 13.9
GTEX-145ME-1126-SM-5SIAT 13.1
GTEX-139D8-2926-SM-5IJBM 13.1
GTEX-XXEK-1826-SM-4BRVC 12.7
GTEX-V955-1726-SM-4JBHF 12.7
GTEX-ZC5H-2426-SM-4WAZ6 12.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 9.0
Samples: 196

Max RPKM: 15.2
Min RPKM: 5.4
Std RPKM: 1.8
Median RPKM: 8.7
GTEX-R53T-1326-SM-48FCQ 15.2
GTEX-XXEK-1926-SM-4BRVD 15.1
GTEX-14C38-2626-SM-5RQI4 14.9
GTEX-132AR-2726-SM-5PNVN 14.8
GTEX-OXRK-1726-SM-3NB16 14.6
GTEX-139YR-2126-SM-5KM11 13.9
GTEX-WHWD-1226-SM-4OOS1 13.3
GTEX-11WQK-2126-SM-5EQME 13.3
Show all