SMG1

SKIN - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:28.3 FPKM
GTEx:13.7 RPKM

SKIN 1 - Immunohistochemistry

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Annotated protein
expression

Fibroblasts:Low
Keratinocytes:Low
Langerhans:Not detected
Melanocytes:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA006870

 

Antibody HPA031623

 

Fibroblasts

Not detected   Low  

Keratinocytes

Medium   Low  

Langerhans

Medium   Not detected  

Melanocytes

Not detected   Not detected  
   
   
   

SKIN 2 - Immunohistochemistry

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Annotated protein
expression

Epidermal cells:Medium
 
 
 
 

Antibody staining

Antibody HPA006870

 

Antibody HPA031623

 

Epidermal cells

Not detected   Medium  
      
      
      
   
   
   

SKIN - HPA RNA-seq

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Average FPKM

28.3

overview Female, age 34
Sample 1
FPKM: 25.1
Cell types%
Keratinocytes: 60
Other cell types: 40
overview Female, age 30
Sample 2
FPKM: 38.9
Cell types%
Keratinocytes: 55
Other cell types: 45
N/A Male, age 57
Sample 3
FPKM: 20.9

SKIN - GTEx RNA-seq

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Average RPKM

13.7

GTEx sample id

RPKM

 

Skin - Not Sun Exposed (Suprapubic)

Skin - Not Sun Exposed (Suprapubic)
RPKM: 14.1
Samples: 250

Max RPKM: 27.1
Min RPKM: 5.7
Std RPKM: 3
Median RPKM: 13.9
GTEX-ZVT2-0126-SM-5GIDQ 27.1
GTEX-13O3Q-0126-SM-5KM34 22.9
GTEX-11TUW-0626-SM-5LU9M 21.8
GTEX-1314G-1326-SM-5BC6E 20.9
GTEX-Y5V5-0126-SM-5S2NW 20.8
GTEX-ZYY3-2926-SM-5GIEB 20.8
GTEX-13D11-0926-SM-5J2NC 20.7
GTEX-145MI-0626-SM-5SI8S 20.4
Show all
 

Skin - Sun Exposed (Lower leg)

Skin - Sun Exposed (Lower leg)
RPKM: 13.3
Samples: 357

Max RPKM: 25.6
Min RPKM: 3.1
Std RPKM: 3.3
Median RPKM: 12.9
GTEX-ZY6K-1826-SM-5GZXK 25.6
GTEX-WFG8-2226-SM-3GIL9 24.5
GTEX-ZXG5-0126-SM-5GIEU 23.9
GTEX-13N2G-2626-SM-5J1OT 23.9
GTEX-SNMC-1226-SM-2XCFP 23.3
GTEX-WFON-2126-SM-3LK7O 22.4
GTEX-QLQ7-1626-SM-2S1R8 21.8
GTEX-PVOW-0126-SM-2XCFA 21.5
Show all