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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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181.076
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.6 nTPM
HPA:46.6 nTPM
FANTOM5:124.0 Scaled Tags Per Million
Pig:45.1 nTPM
Allen mouse:2.1 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA024470
Pons mean intensity 181.076
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 50.899
Parabrachial nucleus 54.678
Principle sensory trigeminal nucleus 36.238
Locus coeruleus 181.076
Pontine nucleus 43.367
Vestibular nucleus 109.420
Pontine reticular nucleus, oral 30.080
Lateral lemniscus 59.143
Superior paraolivary nucleus 41.010

PONS - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 37.7
1984 Male, age 76, both hemispheres 40.5
2301 Female, age 85, both hemispheres 37.5
2090 Male, age 80, both hemispheres 36.9
2188 Female, age 91, both hemispheres 35.9
Dorsal cochlear nucleus
nTPM: 37.7
2370 Male, age 61, both hemispheres 40.9
2058 Male, age 76, both hemispheres 40.1
2378 Male, age 80, both hemispheres 38.7
2187 Female, age 91, both hemispheres 35.7
2802 Male, age 74, right hemisphere 33.2
Dorsal tegmental nucleus
nTPM: 41.6
2358 Male, age 61, both hemispheres 42.9
1936 Male, age 76, left hemisphere 42.7
2083 Male, age 80, both hemispheres 41.6
2326 Male, age 74, both hemispheres 39.3
Dorsolateral tegmental area
nTPM: 41.8
2337 Male, age 61, both hemispheres 44.6
2360 Male, age 74, both hemispheres 44.0
2751 Female, age 85, both hemispheres 41.9
2654 Male, age 80, both hemispheres 41.7
2141 Male, age 76, both hemispheres 36.8
Kolliker-Fuse nucleus
nTPM: 44.9
2315 Male, age 76, right hemisphere 52.2
2163 Male, age 80, both hemispheres 48.1
2793 Female, age 91, left hemisphere 34.3
Lateral lemniscal nuclei
nTPM: 35.8
2746 Female, age 85, left hemisphere 40.3
2453 Male, age 74, right hemisphere 36.0
2169 Male, age 76, both hemispheres 35.0
2320 Female, age 91, left hemisphere 34.7
2036 Male, age 80, both hemispheres 33.0
Lateral parabrachial nucleus
nTPM: 41.3
2792 Male, age 76, both hemispheres 43.9
2139 Female, age 85, right hemisphere 40.7
2013 Male, age 80, both hemispheres 40.5
2790 Male, age 61, both hemispheres 40.0
Lateral vestibular nucleus
nTPM: 43.6
2184 Male, age 76, both hemispheres 49.0
2311 Male, age 80, both hemispheres 38.2
Locus coeruleus
nTPM: 36.6
2317 Female, age 72, unknown 39.3
2123 Female, age 91, both hemispheres 39.1
1980 Male, age 76, both hemispheres 38.6
2788 Male, age 74, unknown 36.3
2162 Male, age 80, both hemispheres 36.0
2014 Male, age 55, unknown 35.5
2720 Male, age 74, both hemispheres 31.3
Medial olivary nucleus
nTPM: 46.6
1943 Male, age 61, both hemispheres 48.8
2138 Female, age 91, both hemispheres 47.6
1962 Male, age 76, both hemispheres 47.4
2851 Male, age 80, both hemispheres 42.7
Medial parabrachial nucleus
nTPM: 39.1
2156 Male, age 61, both hemispheres 41.2
2463 Female, age 85, right hemisphere 41.0
2786 Male, age 76, both hemispheres 39.1
2170 Female, age 91, both hemispheres 39.0
2854 Male, age 80, both hemispheres 35.4
Medial periolivary nuclei
nTPM: 36.2
2081 Male, age 80, both hemispheres 38.5
2791 Male, age 74, right hemisphere 36.7
2458 Female, age 91, both hemispheres 36.6
2171 Female, age 85, both hemispheres 35.2
2063 Male, age 76, both hemispheres 34.0
Motor facial nucleus
nTPM: 36.5
2795 Female, age 91, both hemispheres 42.4
2126 Male, age 61, both hemispheres 39.4
2365 Male, age 74, right hemisphere 36.8
2062 Male, age 76, both hemispheres 34.1
2697 Female, age 85, both hemispheres 34.0
2327 Male, age 80, both hemispheres 32.5
Motor trigeminal nucleus
nTPM: 37.0
2309 Male, age 76, both hemispheres 39.8
2335 Male, age 61, both hemispheres 38.6
2079 Male, age 80, both hemispheres 36.2
2321 Female, age 91, both hemispheres 35.3
2560 Male, age 74, both hemispheres 35.0
Nuclei of the trapezoid body
nTPM: 37.6
2159 Male, age 61, both hemispheres 40.8
2368 Female, age 91, both hemispheres 40.1
2735 Female, age 85, both hemispheres 36.7
1983 Male, age 76, both hemispheres 35.7
2166 Male, age 80, both hemispheres 34.5
Paramedian reticular nucleus
nTPM: 38.8
2057 Male, age 80, both hemispheres 41.9
2313 Male, age 61, both hemispheres 39.4
2052 Male, age 76, both hemispheres 38.5
2050 Female, age 85, both hemispheres 35.3
Pontine nuclei
nTPM: 38.2
1863 Male, age 55, unknown 43.0
2109 Female, age 72, unknown 41.6
2115 Male, age 80, left hemisphere 41.0
2727 Male, age 61, right hemisphere 39.6
1968 Male, age 76, left hemisphere 36.0
2454 Male, age 74, left hemisphere 35.4
2787 Female, age 85, both hemispheres 34.9
2319 Female, age 91, both hemispheres 34.3
Pontine raphe nucleus
nTPM: 34.7
2853 Male, age 76, midline 36.5
2122 Female, age 85, midline 32.8
Posteroventral cochlear nucleus
nTPM: 38.8
2341 Male, age 80, both hemispheres 40.5
2371 Male, age 61, both hemispheres 39.5
2070 Male, age 76, both hemispheres 39.3
2135 Female, age 91, both hemispheres 38.3
2752 Female, age 85, both hemispheres 36.6
Principal sensory trigeminal nucleus
nTPM: 39.0
2324 Male, age 76, both hemispheres 47.9
2158 Male, age 61, both hemispheres 38.7
2367 Female, age 91, left hemisphere 35.1
2008 Male, age 80, left hemisphere 34.5
Reticular pontine nucleus, caudal
nTPM: 37.3
2092 Male, age 76, both hemispheres 39.5
2457 Female, age 91, both hemispheres 38.8
2559 Male, age 74, both hemispheres 35.6
2332 Male, age 80, right hemisphere 35.2
Reticular pontine nucleus, oral
nTPM: 37.6
1939 Male, age 80, both hemispheres 43.0
2167 Male, age 76, both hemispheres 39.0
2012 Female, age 85, both hemispheres 37.5
2366 Female, age 91, both hemispheres 36.1
2361 Male, age 74, both hemispheres 32.6
Reticulotegmental nucleus
nTPM: 36.2
2333 Male, age 80, both hemispheres 38.7
2322 Female, age 91, both hemispheres 37.2
2452 Male, age 74, both hemispheres 35.1
2325 Male, age 76, both hemispheres 34.0
Spinal trigeminal nucleus, oral
nTPM: 40.2
2737 Female, age 85, both hemispheres 43.0
2164 Male, age 80, both hemispheres 40.8
1978 Male, age 76, both hemispheres 36.9
Subcoeruleus area
nTPM: 36.9
2369 Female, age 85, left hemisphere 41.4
1958 Male, age 80, both hemispheres 37.6
2089 Male, age 76, left hemisphere 36.7
2451 Male, age 74, both hemispheres 34.9
2323 Female, age 91, left hemisphere 34.1
Superior olive
nTPM: 35.6
2364 Male, age 74, right hemisphere 38.6
2020 Male, age 76, both hemispheres 37.3
2329 Male, age 80, right hemisphere 34.5
1875 Female, age 85, both hemispheres 34.0
2561 Female, age 91, both hemispheres 33.8
Superior vestibular nucleus
nTPM: 43.2
2061 Male, age 76, both hemispheres 43.9
2383 Male, age 74, both hemispheres 43.9
2015 Male, age 80, both hemispheres 41.8
Ventral periolivary nuclei
nTPM: 35.3
2130 Female, age 85, both hemispheres 37.2
2165 Male, age 80, both hemispheres 36.4
2023 Male, age 76, both hemispheres 35.6
2794 Female, age 91, left hemisphere 31.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 37.6
2359 Male, age 61, both hemispheres 39.0
2840 Female, age 85, both hemispheres 38.8
2456 Female, age 91, both hemispheres 37.9
2449 Male, age 74, both hemispheres 36.9
2161 Male, age 80, both hemispheres 36.8
1959 Male, age 76, both hemispheres 36.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 124.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 124.0
FF:10182-103D2 60 years, female 125.0
FF:10165-103B3 76 years, female 123.1
Pons
Scaled Tags Per Million: 71.0
FF:10033-101E6 18-54 years, mixed 71.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 45.1
Pig sample Sample description nTPM
Pons
nTPM: 45.1
Samples: 4

Max nTPM: 56.3
Min nTPM: 33.5
Sample A Female 46.6
Sample B Female 33.5
Sample C Male 43.8
Sample D Male 56.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 2.1
73817430 Antisense, RP_051101_01_A05, Mouse strain C57BL/6J (56 days, male) 2.6
77798987 Antisense, RP_070212_03_A11, Mouse strain C57BL/6J (56 days, male) 2.2
69540345 Antisense, RP_050426_01_E10, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.