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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 30.2
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 26.4
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 28.8
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 21.6
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 29.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 24.4
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 30.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 33.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 24.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 26.6
Min RPKM: 6.3
Std RPKM: 4.1
Median RPKM: 13.6
GTEX-XBED-2026-SM-4AT5D
26.6
GTEX-QV44-1726-SM-4R1KG
25.7
GTEX-XPVG-2226-SM-4B65U
25.4
GTEX-NFK9-0126-SM-3LK5H
24.3
GTEX-WFON-2026-SM-4LVMW
23.4
GTEX-QLQ7-1426-SM-4R1JX
23.4
GTEX-13FTW-1326-SM-5LZZD
23.0
GTEX-P4QR-0226-SM-3NMCH
22.5
GTEX-RM2N-1326-SM-48FCW
22.2
GTEX-PLZ5-1526-SM-3P5ZX
21.7
GTEX-111CU-1726-SM-5EGHM
21.5
GTEX-T5JC-0726-SM-4DM55
21.4
GTEX-QV31-1126-SM-4R1K4
20.5
GTEX-O5YT-2126-SM-3MJGD
19.7
GTEX-13O21-1226-SM-5J2MK
19.5
GTEX-Y8E4-2226-SM-5LU94
19.5
GTEX-ZDTT-2026-SM-5K7TY
19.2
GTEX-13O61-2026-SM-5J2M6
19.0
GTEX-WVLH-2626-SM-4MVNV
18.9
GTEX-S4Q7-1226-SM-4AD5I
18.6
GTEX-ZA64-1626-SM-5CVME
18.5
GTEX-SUCS-1326-SM-4DM5T
18.4
GTEX-YEC4-1526-SM-4W1YU
18.2
GTEX-147JS-0126-SM-5S2TW
18.1
GTEX-U3ZM-1626-SM-4DXSK
17.8
GTEX-QLQW-1026-SM-447A9
17.3
GTEX-Y9LG-1726-SM-4VBQE
17.3
GTEX-OXRL-2126-SM-3NM98
17.3
GTEX-S95S-1126-SM-4B64E
17.3
GTEX-1399Q-2826-SM-5IJEZ
17.2
GTEX-11WQK-2826-SM-5EQKH
17.0
GTEX-1339X-1926-SM-5PNVP
16.9
GTEX-1212Z-0326-SM-5FQSJ
16.9
GTEX-YB5E-1926-SM-5IFIG
16.7
GTEX-WFG8-1926-SM-4LVM1
16.6
GTEX-ZDYS-1326-SM-5IJFF
16.5
GTEX-13O1R-0726-SM-5IJEI
16.3
GTEX-WOFM-1126-SM-4OOSB
16.3
GTEX-13112-0226-SM-5P9IV
16.3
GTEX-14753-0626-SM-5Q5CY
16.2
GTEX-YF7O-2026-SM-4W1YE
16.2
GTEX-XPT6-1626-SM-4B655
16.0
GTEX-R55C-1426-SM-48FED
16.0
GTEX-S7SE-0326-SM-4AT5Q
15.9
GTEX-ZT9W-2226-SM-57WFU
15.8
GTEX-ZAB4-0126-SM-5CVMG
15.8
GTEX-UPJH-0126-SM-4IHLL
15.8
GTEX-Q2AH-1526-SM-48TZG
15.7
GTEX-ZTSS-1526-SM-51MTC
15.7
GTEX-P4QS-2126-SM-3NMCF
15.7
GTEX-Y5V6-1726-SM-4VDSZ
15.7
GTEX-ZTX8-1126-SM-51MRM
15.7
GTEX-ZPU1-2126-SM-57WED
15.6
GTEX-YFCO-1726-SM-4W21S
15.5
GTEX-U3ZH-1526-SM-4DXV1
15.3
GTEX-13OW6-0126-SM-5IJGM
15.3
GTEX-QMRM-1526-SM-4R1K6
15.3
GTEX-OHPM-2126-SM-3LK75
15.3
GTEX-SNMC-1026-SM-4DM7K
15.3
GTEX-S3XE-1526-SM-4AD5A
15.1
GTEX-111YS-2026-SM-5EGGL
15.1
GTEX-S33H-0126-SM-4AD62
15.1
GTEX-XMK1-2026-SM-4B65K
15.1
GTEX-YJ89-0626-SM-4TT3Z
15.0
GTEX-11EI6-2226-SM-5EGJM
15.0
GTEX-13111-1526-SM-5EGJX
15.0
GTEX-Q2AI-1226-SM-48U14
14.9
GTEX-XGQ4-2026-SM-4AT6G
14.9
GTEX-OIZI-0126-SM-3NB13
14.9
GTEX-11P82-1526-SM-5BC5M
14.7
GTEX-139T6-1226-SM-5IFFC
14.7
GTEX-XLM4-1526-SM-4AT6D
14.6
GTEX-117XS-2026-SM-5GID1
14.6
GTEX-144GN-1626-SM-5Q5BU
14.5
GTEX-TKQ1-0926-SM-4DXU2
14.4
GTEX-R55D-0126-SM-48FEL
14.3
GTEX-OIZH-2126-SM-3NB1P
14.3
GTEX-12C56-1426-SM-5FQSW
14.2
GTEX-11NSD-1026-SM-5N9BE
14.1
GTEX-ZVZP-2226-SM-57WBF
14.1
GTEX-11P7K-1026-SM-5HL6Y
14.0
GTEX-1399R-1626-SM-5P9GG
14.0
GTEX-U4B1-1526-SM-4DXSL
13.9
GTEX-13NZB-2026-SM-5MR4M
13.8
GTEX-145LT-0426-SM-5LUAP
13.8
GTEX-ZT9X-1426-SM-5DUX1
13.7
GTEX-V955-1926-SM-4KL1L
13.5
GTEX-U8T8-1126-SM-4DXUE
13.4
GTEX-OOBJ-2126-SM-3NB1N
13.3
GTEX-13NZA-2526-SM-5IJFX
13.3
GTEX-11EQ8-1426-SM-5EGJR
13.2
GTEX-WHSB-2126-SM-4M1XF
13.1
GTEX-12ZZY-0126-SM-5LZV2
13.0
GTEX-145MO-0126-SM-5S2QU
13.0
GTEX-13NYB-2226-SM-5MR58
13.0
GTEX-X261-2326-SM-4PQYU
12.9
GTEX-11ONC-2226-SM-5HL6D
12.9
GTEX-SNOS-1126-SM-4DM67
12.9
GTEX-WZTO-0326-SM-4PQYZ
12.8
GTEX-TKQ2-1526-SM-4DXUN
12.8
GTEX-ZUA1-2726-SM-59HLJ
12.6
GTEX-ZV7C-2026-SM-5NQ8F
12.6
GTEX-PW2O-1426-SM-48TCD
12.4
GTEX-ZZ64-1126-SM-5GZXY
12.3
GTEX-147F4-0626-SM-5LUAK
12.1
GTEX-144GM-0426-SM-5Q5C8
12.1
GTEX-11DXZ-2126-SM-59881
12.0
GTEX-RUSQ-2126-SM-47JXK
11.8
GTEX-13OVL-0426-SM-5IFG6
11.8
GTEX-11NUK-2626-SM-5A5MB
11.7
GTEX-YEC3-1726-SM-5IFIK
11.6
GTEX-QEG5-0126-SM-4R1JR
11.6
GTEX-13FHP-2826-SM-5IJFW
11.5
GTEX-145MH-2326-SM-5O9AW
11.3
GTEX-ZYFC-0126-SM-5GIEH
11.3
GTEX-N7MS-0126-SM-3TW8O
11.2
GTEX-ZVTK-0126-SM-57WDG
11.2
GTEX-13N1W-2626-SM-5IJEP
11.2
GTEX-13N2G-0126-SM-5N9DV
11.2
GTEX-11EQ9-1926-SM-5PNVV
11.2
GTEX-13OVH-0726-SM-5N9BU
11.2
GTEX-132QS-1226-SM-5P9GD
11.2
GTEX-XBEC-0126-SM-4GIDT
11.1
GTEX-111VG-1926-SM-5GIDO
11.1
GTEX-13OW5-2526-SM-5L3I1
11.0
GTEX-XAJ8-1326-SM-47JYT
11.0
GTEX-X3Y1-2626-SM-4PQZI
11.0
GTEX-11TT1-2226-SM-5GU6B
10.9
GTEX-12WSH-0326-SM-5GCNH
10.8
GTEX-131XE-0426-SM-5IJF4
10.8
GTEX-144GL-0726-SM-5LU4P
10.6
GTEX-REY6-0126-SM-48FDT
10.5
GTEX-139TT-2226-SM-5LZWO
10.5
GTEX-12WSI-2126-SM-5GCMV
10.4
GTEX-WH7G-1926-SM-4LVMM
10.4
GTEX-11O72-0726-SM-5P9GO
10.2
GTEX-139TS-1726-SM-5IJG5
10.2
GTEX-T6MN-2026-SM-4DM7L
10.0
GTEX-11TUW-2226-SM-5EQL9
9.9
GTEX-T8EM-0126-SM-4DM5R
9.9
GTEX-14A6H-2326-SM-5Q5B5
9.9
GTEX-WK11-0326-SM-4OOS6
9.8
GTEX-VJYA-1426-SM-4KL1Y
9.8
GTEX-11LCK-2326-SM-5HL53
9.8
GTEX-OOBK-2126-SM-3LK5T
9.6
GTEX-ZAB5-2426-SM-5CVMW
9.6
GTEX-XQ3S-2726-SM-4BOP2
9.5
GTEX-QEG4-0126-SM-48TZE
9.5
GTEX-Y111-2426-SM-4TT23
9.4
GTEX-RWSA-2426-SM-47JXR
9.4
GTEX-RN64-2326-SM-48FDW
9.3
GTEX-13FLW-2126-SM-5N9FD
9.1
GTEX-11WQC-2326-SM-5EQKE
8.9
GTEX-14ABY-0626-SM-5Q5C9
8.8
GTEX-11OF3-1826-SM-5987N
8.8
GTEX-11GS4-2026-SM-5N9CP
8.8
GTEX-X5EB-2026-SM-4E3KA
8.7
GTEX-13VXU-0726-SM-5J2O7
8.5
GTEX-11NV4-1726-SM-5N9FC
8.4
GTEX-117YW-1526-SM-5EGGP
8.3
GTEX-12WSL-2326-SM-5DUXQ
8.3
GTEX-ZQUD-2026-SM-51MSM
8.2
GTEX-U8XE-0126-SM-4E3I3
8.2
GTEX-R55E-0726-SM-48FCZ
8.1
GTEX-V1D1-2126-SM-4JBH4
8.0
GTEX-12696-0226-SM-5EGL3
7.9
GTEX-S7PM-0626-SM-4AD4Q
7.8
GTEX-111FC-1926-SM-5GZYC
7.6
GTEX-11ZUS-2726-SM-5FQUA
7.3
GTEX-ZYT6-2726-SM-5GICP
7.3
GTEX-12WSM-1326-SM-5GCP9
6.4
GTEX-Z93S-1726-SM-5HL8G
6.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.