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CDK1
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  • CDK1
PROTEIN STRUCTURE
ANTIBODIES
AND
VALIDATION
Protein structures
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CDK1
Synonyms CDC2, CDC28A
Gene descriptioni

Full gene name according to HGNC.

Cyclin dependent kinase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Enzymes
Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Read more
Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband q21.2
Chromosome location (bp) 60778331 - 60794852
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000170312 (version 103.38)
Entrez gene 983
HGNC HGNC:1722
UniProt P06493 (UniProt - Evidence at protein level)
neXtProt NX_P06493
Antibodypedia CDK1 antibodies


PROTEIN STRUCTUREi

The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).

In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl

Read more

Predicted


Description: Structure prediction from Alphafold project. Structure version 2

# Chains: 1      # Clinical variants: 0      # Population variants: 61

Antigens:

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On

Variants:

Off
Clinical
Population

Color scheme:

Confidence
Residue index
Chain name

Autorotate:

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On



PROTEIN BROWSERi

The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.

At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.

Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).

The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).

If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.

Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
CDK1-201
CDK1-202
CDK1-203
CDK1-204
CDK1-207
CDK1-209


PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant UniProt Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CDK1-201
ENSP00000325970
ENST00000316629
P06493 [Direct mapping]
Cyclin-dependent kinase 1
A0A024QZJ8 [Target identity:100%; Query identity:100%]
Cell division cycle 2, G1 to S and G2 to M, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
Transporters
   Transporter channels and pores
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000086 [G2/M transition of mitotic cell cycle]
GO:0000166 [nucleotide binding]
GO:0000187 [activation of MAPK activity]
GO:0000226 [microtubule cytoskeleton organization]
GO:0000307 [cyclin-dependent protein kinase holoenzyme complex]
GO:0000781 [chromosome, telomeric region]
GO:0001618 [virus receptor activity]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005759 [mitochondrial matrix]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005876 [spindle microtubule]
GO:0006260 [DNA replication]
GO:0006281 [DNA repair]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006468 [protein phosphorylation]
GO:0006915 [apoptotic process]
GO:0006977 [DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest]
GO:0007049 [cell cycle]
GO:0007077 [mitotic nuclear envelope disassembly]
GO:0007095 [mitotic G2 DNA damage checkpoint]
GO:0007098 [centrosome cycle]
GO:0007344 [pronuclear fusion]
GO:0008353 [RNA polymerase II CTD heptapeptide repeat kinase activity]
GO:0010389 [regulation of G2/M transition of mitotic cell cycle]
GO:0010971 [positive regulation of G2/M transition of mitotic cell cycle]
GO:0014038 [regulation of Schwann cell differentiation]
GO:0016020 [membrane]
GO:0016032 [viral process]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016477 [cell migration]
GO:0016572 [histone phosphorylation]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0018107 [peptidyl-threonine phosphorylation]
GO:0030332 [cyclin binding]
GO:0030496 [midbody]
GO:0030855 [epithelial cell differentiation]
GO:0031145 [anaphase-promoting complex-dependent catabolic process]
GO:0034501 [protein localization to kinetochore]
GO:0035173 [histone kinase activity]
GO:0042752 [regulation of circadian rhythm]
GO:0043066 [negative regulation of apoptotic process]
GO:0045995 [regulation of embryonic development]
GO:0046718 [viral entry into host cell]
GO:0048511 [rhythmic process]
GO:0051301 [cell division]
GO:0070062 [extracellular exosome]
GO:0072686 [mitotic spindle]
GO:0090166 [Golgi disassembly]
GO:0097125 [cyclin B1-CDK1 complex]
GO:0097472 [cyclin-dependent protein kinase activity]
GO:0097711 [ciliary basal body-plasma membrane docking]
GO:1900182 [positive regulation of protein localization to nucleus]
GO:1901990 [regulation of mitotic cell cycle phase transition]
GO:1905448 [positive regulation of mitochondrial ATP synthesis coupled electron transport]
Show all
240 aa
27.5 kDa
No 0
CDK1-202
ENSP00000362915
ENST00000373809
P06493 [Direct mapping]
Cyclin-dependent kinase 1
A0A024QZJ8 [Target identity:100%; Query identity:100%]
Cell division cycle 2, G1 to S and G2 to M, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
Transporters
   Transporter channels and pores
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000086 [G2/M transition of mitotic cell cycle]
GO:0000166 [nucleotide binding]
GO:0000187 [activation of MAPK activity]
GO:0000226 [microtubule cytoskeleton organization]
GO:0000307 [cyclin-dependent protein kinase holoenzyme complex]
GO:0000781 [chromosome, telomeric region]
GO:0001618 [virus receptor activity]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005759 [mitochondrial matrix]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005876 [spindle microtubule]
GO:0006260 [DNA replication]
GO:0006281 [DNA repair]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006468 [protein phosphorylation]
GO:0006915 [apoptotic process]
GO:0006977 [DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest]
GO:0007049 [cell cycle]
GO:0007077 [mitotic nuclear envelope disassembly]
GO:0007095 [mitotic G2 DNA damage checkpoint]
GO:0007098 [centrosome cycle]
GO:0007344 [pronuclear fusion]
GO:0008353 [RNA polymerase II CTD heptapeptide repeat kinase activity]
GO:0010389 [regulation of G2/M transition of mitotic cell cycle]
GO:0010971 [positive regulation of G2/M transition of mitotic cell cycle]
GO:0014038 [regulation of Schwann cell differentiation]
GO:0016020 [membrane]
GO:0016032 [viral process]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016477 [cell migration]
GO:0016572 [histone phosphorylation]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0018107 [peptidyl-threonine phosphorylation]
GO:0030332 [cyclin binding]
GO:0030496 [midbody]
GO:0030855 [epithelial cell differentiation]
GO:0031145 [anaphase-promoting complex-dependent catabolic process]
GO:0034501 [protein localization to kinetochore]
GO:0035173 [histone kinase activity]
GO:0042752 [regulation of circadian rhythm]
GO:0043066 [negative regulation of apoptotic process]
GO:0045995 [regulation of embryonic development]
GO:0046718 [viral entry into host cell]
GO:0048511 [rhythmic process]
GO:0051301 [cell division]
GO:0070062 [extracellular exosome]
GO:0072686 [mitotic spindle]
GO:0090166 [Golgi disassembly]
GO:0097125 [cyclin B1-CDK1 complex]
GO:0097472 [cyclin-dependent protein kinase activity]
GO:0097711 [ciliary basal body-plasma membrane docking]
GO:1900182 [positive regulation of protein localization to nucleus]
GO:1901990 [regulation of mitotic cell cycle phase transition]
GO:1905448 [positive regulation of mitochondrial ATP synthesis coupled electron transport]
Show all
240 aa
27.5 kDa
No 0
CDK1-203
ENSP00000378699
ENST00000395284
P06493 [Direct mapping]
Cyclin-dependent kinase 1
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
Transporters
   Transporter channels and pores
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000086 [G2/M transition of mitotic cell cycle]
GO:0000166 [nucleotide binding]
GO:0000187 [activation of MAPK activity]
GO:0000226 [microtubule cytoskeleton organization]
GO:0000307 [cyclin-dependent protein kinase holoenzyme complex]
GO:0000781 [chromosome, telomeric region]
GO:0001618 [virus receptor activity]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005759 [mitochondrial matrix]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005876 [spindle microtubule]
GO:0006260 [DNA replication]
GO:0006281 [DNA repair]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006468 [protein phosphorylation]
GO:0006915 [apoptotic process]
GO:0006977 [DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest]
GO:0007049 [cell cycle]
GO:0007077 [mitotic nuclear envelope disassembly]
GO:0007095 [mitotic G2 DNA damage checkpoint]
GO:0007098 [centrosome cycle]
GO:0007344 [pronuclear fusion]
GO:0008353 [RNA polymerase II CTD heptapeptide repeat kinase activity]
GO:0010389 [regulation of G2/M transition of mitotic cell cycle]
GO:0010971 [positive regulation of G2/M transition of mitotic cell cycle]
GO:0014038 [regulation of Schwann cell differentiation]
GO:0016020 [membrane]
GO:0016032 [viral process]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016477 [cell migration]
GO:0016572 [histone phosphorylation]
GO:0016579 [protein deubiquitination]
GO:0016740 [transferase activity]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0018107 [peptidyl-threonine phosphorylation]
GO:0030332 [cyclin binding]
GO:0030496 [midbody]
GO:0030855 [epithelial cell differentiation]
GO:0031145 [anaphase-promoting complex-dependent catabolic process]
GO:0034501 [protein localization to kinetochore]
GO:0035173 [histone kinase activity]
GO:0042752 [regulation of circadian rhythm]
GO:0043066 [negative regulation of apoptotic process]
GO:0045995 [regulation of embryonic development]
GO:0046718 [viral entry into host cell]
GO:0048511 [rhythmic process]
GO:0051301 [cell division]
GO:0070062 [extracellular exosome]
GO:0072686 [mitotic spindle]
GO:0090166 [Golgi disassembly]
GO:0097125 [cyclin B1-CDK1 complex]
GO:0097472 [cyclin-dependent protein kinase activity]
GO:0097711 [ciliary basal body-plasma membrane docking]
GO:1900182 [positive regulation of protein localization to nucleus]
GO:1901990 [regulation of mitotic cell cycle phase transition]
GO:1905448 [positive regulation of mitochondrial ATP synthesis coupled electron transport]
Show all
297 aa
34.1 kDa
No 0
CDK1-204
ENSP00000397973
ENST00000448257
A0A024QZP7 [Direct mapping]
Cell division cycle 2, G1 to S and G2 to M, isoform CRA_a; Cyclin-dependent kinase 1
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0000278 [mitotic cell cycle]
GO:0003682 [chromatin binding]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005759 [mitochondrial matrix]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0007095 [mitotic G2 DNA damage checkpoint]
GO:0007569 [cell aging]
GO:0008283 [cell population proliferation]
GO:0009636 [response to toxic substance]
GO:0010243 [response to organonitrogen compound]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0014070 [response to organic cyclic compound]
GO:0014075 [response to amine]
GO:0014823 [response to activity]
GO:0016301 [kinase activity]
GO:0016572 [histone phosphorylation]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0030261 [chromosome condensation]
GO:0030332 [cyclin binding]
GO:0030544 [Hsp70 protein binding]
GO:0031100 [animal organ regeneration]
GO:0035173 [histone kinase activity]
GO:0042307 [positive regulation of protein import into nucleus]
GO:0042493 [response to drug]
GO:0042542 [response to hydrogen peroxide]
GO:0044772 [mitotic cell cycle phase transition]
GO:0045471 [response to ethanol]
GO:0045740 [positive regulation of DNA replication]
GO:0045931 [positive regulation of mitotic cell cycle]
GO:0046686 [response to cadmium ion]
GO:0046688 [response to copper ion]
GO:0048678 [response to axon injury]
GO:0051301 [cell division]
GO:0055015 [ventricular cardiac muscle cell development]
GO:0060045 [positive regulation of cardiac muscle cell proliferation]
GO:0065003 [protein-containing complex assembly]
GO:0070301 [cellular response to hydrogen peroxide]
GO:0090166 [Golgi disassembly]
Show all
297 aa
34.1 kDa
No 0
CDK1-207
ENSP00000430665
ENST00000519078
E5RIU6 [Direct mapping]
Cyclin-dependent kinase 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0006468 [protein phosphorylation]
Show all
189 aa
21.7 kDa
No 0
CDK1-209
ENSP00000482996
ENST00000614696
A0A087WZZ9 [Direct mapping]
Cyclin-dependent kinase 1
Show all
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0006468 [protein phosphorylation]
Show all
224 aa
25.8 kDa
No 0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.