BPGM

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:7.3 FPKM
GTEx:5.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA016493

 

Antibody HPA028735

 

Endothelial cells

Not detected   Not detected  

Glandular cells

Low   Not detected  

Peripheral nerve/ganglion

Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

7.3

overview Male, age 54
Sample 1
FPKM: 5.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 6.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 5.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 6.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 8.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 9.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 8.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

5.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 6.6
Samples: 149

Max RPKM: 12
Min RPKM: 3.6
Std RPKM: 1.3
Median RPKM: 6.4
GTEX-11WQK-2526-SM-5CVL8 12.0
GTEX-13PVQ-2726-SM-5L3H7 10.6
GTEX-131XG-1526-SM-5GCNQ 9.8
GTEX-Z93S-2626-SM-57WBX 9.8
GTEX-11DXX-1926-SM-5EGJK 9.6
GTEX-147GR-2826-SM-5RQK8 9.6
GTEX-ZPCL-1626-SM-57WGC 9.1
GTEX-ZYT6-2826-SM-5GICX 8.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.8
Samples: 196

Max RPKM: 20.2
Min RPKM: 2.3
Std RPKM: 1.9
Median RPKM: 4.5
GTEX-14C38-2626-SM-5RQI4 20.2
GTEX-Z93S-2426-SM-5HL8N 10.1
GTEX-11TTK-2426-SM-5PNYO 10.1
GTEX-11WQK-2126-SM-5EQME 10.0
GTEX-13O3O-2526-SM-5L3DR 9.3
GTEX-12ZZZ-2426-SM-5GCNN 8.6
GTEX-12WSL-1626-SM-5GCMU 8.5
GTEX-X5EB-0926-SM-46MVT 8.2
Show all