CHM

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:5.4 FPKM
GTEx:2.3 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA003231

 

Antibody CAB016171

 

Endothelial cells

Not detected   Low  

Glandular cells

Medium   High  

Peripheral nerve/ganglion

Medium   Not detected  
   
   

COLON - HPA RNA-seq

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Average FPKM

5.4

overview Male, age 54
Sample 1
FPKM: 5.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 7.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 5.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 3.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 6.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 4.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 5.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

2.3

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 2.4
Samples: 149

Max RPKM: 3.8
Min RPKM: 1.1
Std RPKM: 0.4
Median RPKM: 2.4
GTEX-131XG-1526-SM-5GCNQ 3.8
GTEX-Y114-1626-SM-4TT7I 3.6
GTEX-13VXT-2026-SM-5L3EW 3.6
GTEX-145ME-1126-SM-5SIAT 3.5
GTEX-111YS-1826-SM-5GIEP 3.5
GTEX-ZPIC-2626-SM-57WE2 3.4
GTEX-WYVS-1126-SM-4SOJX 3.4
GTEX-11EM3-1626-SM-5N9CO 3.3
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 2.1
Samples: 196

Max RPKM: 3.8
Min RPKM: 0.9
Std RPKM: 0.5
Median RPKM: 2
GTEX-13CF3-1426-SM-5K7YY 3.8
GTEX-ZV6S-1226-SM-59HLH 3.7
GTEX-111YS-1626-SM-5GZZ9 3.6
GTEX-13O3O-2526-SM-5L3DR 3.4
GTEX-T6MO-0826-SM-4DM51 3.2
GTEX-11P81-1126-SM-5GU5G 3.2
GTEX-13OVG-1426-SM-5K7VP 3.2
GTEX-TKQ1-0626-SM-4DXTS 3.1
Show all