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COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:2.7 FPKM
GTEx:3.4 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Not available

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA001399

 

Antibody HPA023884

 

Antibody CAB004307

 

Endothelial cells

Medium   Medium   Low  

Glandular cells

Low   Low   Low  

Peripheral nerve/ganglion

Low   Low   Not available  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

2.7

overview Male, age 54
Sample 1
FPKM: 2.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 2.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 2.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 1.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 5.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 2.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 2.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

3.4

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 3.8
Samples: 149

Max RPKM: 12.5
Min RPKM: 1
Std RPKM: 1.5
Median RPKM: 3.7
GTEX-YEC3-2026-SM-4WWFL 12.5
GTEX-13X6I-2726-SM-5Q5ET 7.7
GTEX-XV7Q-2226-SM-4BRVY 7.5
GTEX-132NY-2726-SM-5PNY2 7.0
GTEX-1477Z-2126-SM-5Q5CM 7.0
GTEX-13OW6-2226-SM-5N9FL 6.9
GTEX-14C39-1626-SM-5S2P4 6.8
GTEX-12696-1926-SM-5EGJT 6.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 3.0
Samples: 196

Max RPKM: 12.7
Min RPKM: 0.9
Std RPKM: 1.7
Median RPKM: 2.5
GTEX-14C38-2626-SM-5RQI4 12.7
GTEX-13OVJ-1726-SM-5IJDZ 8.8
GTEX-13OVI-2026-SM-5J1MU 8.5
GTEX-13O3O-2526-SM-5L3DR 7.9
GTEX-13O3P-2326-SM-5KM55 7.8
GTEX-ZXES-1626-SM-5NQ7L 7.5
GTEX-ZAB4-2226-SM-5HL97 7.5
GTEX-111VG-2226-SM-5N9DU 7.2
Show all