DMD

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:7.2 FPKM
GTEx:7.6 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA002725

 

Antibody HPA023885

 

Antibody CAB000119

 

Endothelial cells

Low   Low   Not detected  

Glandular cells

Low   Low   Not detected  

Peripheral nerve/ganglion

Medium   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

7.2

overview Male, age 54
Sample 1
FPKM: 5.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 6.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 3.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 4.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 7.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 17.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 5.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

7.6

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 10.6
Samples: 149

Max RPKM: 17.3
Min RPKM: 3.1
Std RPKM: 2.4
Median RPKM: 10.7
GTEX-14E6E-1726-SM-5S2R6 17.3
GTEX-WYVS-1126-SM-4SOJX 15.7
GTEX-11I78-1326-SM-5PNY9 15.2
GTEX-12BJ1-2026-SM-5FQUH 15.2
GTEX-12ZZW-2426-SM-5DUWE 15.1
GTEX-ZZ64-0826-SM-5E449 15.0
GTEX-13111-1926-SM-5GCOL 14.8
GTEX-YJ8O-1426-SM-5PNV9 14.5
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.6
Samples: 196

Max RPKM: 16.5
Min RPKM: 0.3
Std RPKM: 4.1
Median RPKM: 3.2
GTEX-11P81-1126-SM-5GU5G 16.5
GTEX-ZV6S-1226-SM-59HLH 16.1
GTEX-TKQ1-0626-SM-4DXTS 15.5
GTEX-XXEK-1926-SM-4BRVD 14.1
GTEX-111YS-1626-SM-5GZZ9 14.1
GTEX-13U4I-2426-SM-5LU34 13.5
GTEX-12WSL-1626-SM-5GCMU 12.8
GTEX-13CF3-1426-SM-5K7YY 12.8
Show all