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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 48.6
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 42.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 17.6
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 74.9
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 58.9
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 38.9
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 89.9
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 49.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 83.3
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 38.2
Min RPKM: 3.4
Std RPKM: 7.2
Median RPKM: 18.9
GTEX-11ZUS-2726-SM-5FQUA
38.2
GTEX-111VG-1926-SM-5GIDO
36.3
GTEX-11NV4-1726-SM-5N9FC
35.5
GTEX-13OVL-0426-SM-5IFG6
35.3
GTEX-13112-0226-SM-5P9IV
33.6
GTEX-13FHP-2826-SM-5IJFW
31.8
GTEX-R55E-0726-SM-48FCZ
31.5
GTEX-ZYT6-2726-SM-5GICP
31.5
GTEX-14ABY-0626-SM-5Q5C9
31.3
GTEX-13VXU-0726-SM-5J2O7
31.2
GTEX-139TS-1726-SM-5IJG5
31.0
GTEX-11WQC-2326-SM-5EQKE
30.7
GTEX-REY6-0126-SM-48FDT
30.6
GTEX-144GM-0426-SM-5Q5C8
30.5
GTEX-117XS-2026-SM-5GID1
29.6
GTEX-139TT-2226-SM-5LZWO
29.6
GTEX-145MO-0126-SM-5S2QU
29.5
GTEX-117YW-1526-SM-5EGGP
29.2
GTEX-S7PM-0626-SM-4AD4Q
29.2
GTEX-WK11-0326-SM-4OOS6
29.1
GTEX-144GL-0726-SM-5LU4P
29.0
GTEX-T6MN-2026-SM-4DM7L
28.9
GTEX-1212Z-0326-SM-5FQSJ
28.1
GTEX-V1D1-2126-SM-4JBH4
27.8
GTEX-ZPU1-2126-SM-57WED
27.7
GTEX-ZQUD-2026-SM-51MSM
27.4
GTEX-Z93S-1726-SM-5HL8G
27.3
GTEX-OXRL-2126-SM-3NM98
27.3
GTEX-TKQ2-1526-SM-4DXUN
27.1
GTEX-11OF3-1826-SM-5987N
27.0
GTEX-OIZH-2126-SM-3NB1P
27.0
GTEX-12WSH-0326-SM-5GCNH
26.7
GTEX-Y111-2426-SM-4TT23
26.5
GTEX-XBEC-0126-SM-4GIDT
26.4
GTEX-ZAB5-2426-SM-5CVMW
26.4
GTEX-ZT9W-2226-SM-57WFU
26.3
GTEX-11EQ9-1926-SM-5PNVV
26.1
GTEX-132QS-1226-SM-5P9GD
26.0
GTEX-ZTSS-1526-SM-51MTC
25.9
GTEX-13FLW-2126-SM-5N9FD
25.8
GTEX-QEG4-0126-SM-48TZE
25.7
GTEX-WHSB-2126-SM-4M1XF
25.3
GTEX-12ZZY-0126-SM-5LZV2
25.0
GTEX-OHPM-2126-SM-3LK75
24.7
GTEX-ZVTK-0126-SM-57WDG
24.5
GTEX-U4B1-1526-SM-4DXSL
24.2
GTEX-XGQ4-2026-SM-4AT6G
24.1
GTEX-11EQ8-1426-SM-5EGJR
23.8
GTEX-14753-0626-SM-5Q5CY
23.7
GTEX-TKQ1-0926-SM-4DXU2
23.4
GTEX-ZYFC-0126-SM-5GIEH
23.3
GTEX-X5EB-2026-SM-4E3KA
23.1
GTEX-T8EM-0126-SM-4DM5R
22.5
GTEX-WH7G-1926-SM-4LVMM
22.4
GTEX-Q2AI-1226-SM-48U14
22.3
GTEX-11TUW-2226-SM-5EQL9
22.1
GTEX-11GS4-2026-SM-5N9CP
21.9
GTEX-11LCK-2326-SM-5HL53
21.5
GTEX-145MH-2326-SM-5O9AW
21.5
GTEX-13N1W-2626-SM-5IJEP
21.5
GTEX-13O61-2026-SM-5J2M6
21.5
GTEX-ZZ64-1126-SM-5GZXY
21.4
GTEX-11NSD-1026-SM-5N9BE
21.3
GTEX-13N2G-0126-SM-5N9DV
21.3
GTEX-ZV7C-2026-SM-5NQ8F
21.2
GTEX-12WSL-2326-SM-5DUXQ
21.0
GTEX-13NZA-2526-SM-5IJFX
20.8
GTEX-N7MS-0126-SM-3TW8O
20.6
GTEX-XAJ8-1326-SM-47JYT
20.5
GTEX-OOBK-2126-SM-3LK5T
20.5
GTEX-S7SE-0326-SM-4AT5Q
20.4
GTEX-YEC4-1526-SM-4W1YU
20.4
GTEX-ZVZP-2226-SM-57WBF
20.3
GTEX-QLQW-1026-SM-447A9
20.2
GTEX-11DXZ-2126-SM-59881
20.2
GTEX-12C56-1426-SM-5FQSW
20.1
GTEX-SNMC-1026-SM-4DM7K
20.1
GTEX-XQ3S-2726-SM-4BOP2
19.9
GTEX-U8T8-1126-SM-4DXUE
19.7
GTEX-ZDYS-1326-SM-5IJFF
19.4
GTEX-13OW5-2526-SM-5L3I1
19.4
GTEX-PW2O-1426-SM-48TCD
19.4
GTEX-OOBJ-2126-SM-3NB1N
19.4
GTEX-Q2AH-1526-SM-48TZG
19.4
GTEX-111YS-2026-SM-5EGGL
19.2
GTEX-11NUK-2626-SM-5A5MB
18.9
GTEX-111FC-1926-SM-5GZYC
18.8
GTEX-QEG5-0126-SM-4R1JR
18.8
GTEX-R55C-1426-SM-48FED
18.6
GTEX-U8XE-0126-SM-4E3I3
18.6
GTEX-147JS-0126-SM-5S2TW
18.5
GTEX-Y5V6-1726-SM-4VDSZ
18.5
GTEX-SNOS-1126-SM-4DM67
18.3
GTEX-YFCO-1726-SM-4W21S
18.3
GTEX-RUSQ-2126-SM-47JXK
18.2
GTEX-13O21-1226-SM-5J2MK
18.0
GTEX-YEC3-1726-SM-5IFIK
17.7
GTEX-WVLH-2626-SM-4MVNV
17.7
GTEX-WZTO-0326-SM-4PQYZ
17.6
GTEX-12WSM-1326-SM-5GCP9
17.5
GTEX-QV31-1126-SM-4R1K4
17.5
GTEX-S95S-1126-SM-4B64E
17.5
GTEX-13NZB-2026-SM-5MR4M
17.4
GTEX-11P82-1526-SM-5BC5M
17.4
GTEX-RM2N-1326-SM-48FCW
17.4
GTEX-ZA64-1626-SM-5CVME
17.3
GTEX-XLM4-1526-SM-4AT6D
17.3
GTEX-ZUA1-2726-SM-59HLJ
17.2
GTEX-XMK1-2026-SM-4B65K
16.9
GTEX-U3ZM-1626-SM-4DXSK
16.9
GTEX-13111-1526-SM-5EGJX
16.7
GTEX-YF7O-2026-SM-4W1YE
16.7
GTEX-X3Y1-2626-SM-4PQZI
16.5
GTEX-SUCS-1326-SM-4DM5T
16.5
GTEX-11EI6-2226-SM-5EGJM
16.4
GTEX-S3XE-1526-SM-4AD5A
16.3
GTEX-X261-2326-SM-4PQYU
16.1
GTEX-1399R-1626-SM-5P9GG
16.0
GTEX-131XE-0426-SM-5IJF4
16.0
GTEX-V955-1926-SM-4KL1L
15.8
GTEX-12696-0226-SM-5EGL3
15.8
GTEX-139T6-1226-SM-5IFFC
15.8
GTEX-11O72-0726-SM-5P9GO
15.6
GTEX-YJ89-0626-SM-4TT3Z
15.4
GTEX-S4Q7-1226-SM-4AD5I
15.4
GTEX-T5JC-0726-SM-4DM55
15.4
GTEX-145LT-0426-SM-5LUAP
15.1
GTEX-XBED-2026-SM-4AT5D
15.0
GTEX-13NYB-2226-SM-5MR58
14.8
GTEX-P4QS-2126-SM-3NMCF
14.8
GTEX-RN64-2326-SM-48FDW
14.6
GTEX-12WSI-2126-SM-5GCMV
14.6
GTEX-13O1R-0726-SM-5IJEI
14.5
GTEX-RWSA-2426-SM-47JXR
14.4
GTEX-S33H-0126-SM-4AD62
13.9
GTEX-111CU-1726-SM-5EGHM
13.7
GTEX-WFG8-1926-SM-4LVM1
13.7
GTEX-13OW6-0126-SM-5IJGM
13.5
GTEX-UPJH-0126-SM-4IHLL
13.5
GTEX-U3ZH-1526-SM-4DXV1
13.1
GTEX-QMRM-1526-SM-4R1K6
13.0
GTEX-14A6H-2326-SM-5Q5B5
12.8
GTEX-ZTX8-1126-SM-51MRM
12.7
GTEX-ZT9X-1426-SM-5DUX1
12.7
GTEX-QLQ7-1426-SM-4R1JX
12.7
GTEX-13OVH-0726-SM-5N9BU
12.3
GTEX-11TT1-2226-SM-5GU6B
11.7
GTEX-WOFM-1126-SM-4OOSB
11.5
GTEX-VJYA-1426-SM-4KL1Y
11.5
GTEX-11P7K-1026-SM-5HL6Y
11.4
GTEX-R55D-0126-SM-48FEL
11.2
GTEX-144GN-1626-SM-5Q5BU
11.0
GTEX-O5YT-2126-SM-3MJGD
10.8
GTEX-P4QR-0226-SM-3NMCH
10.4
GTEX-11ONC-2226-SM-5HL6D
9.1
GTEX-1339X-1926-SM-5PNVP
8.5
GTEX-YB5E-1926-SM-5IFIG
8.5
GTEX-QV44-1726-SM-4R1KG
8.5
GTEX-NFK9-0126-SM-3LK5H
8.4
GTEX-OIZI-0126-SM-3NB13
8.0
GTEX-147F4-0626-SM-5LUAK
7.9
GTEX-XPT6-1626-SM-4B655
7.8
GTEX-13FTW-1326-SM-5LZZD
7.8
GTEX-ZDTT-2026-SM-5K7TY
7.7
GTEX-WFON-2026-SM-4LVMW
6.9
GTEX-Y9LG-1726-SM-4VBQE
6.7
GTEX-PLZ5-1526-SM-3P5ZX
6.5
GTEX-ZAB4-0126-SM-5CVMG
6.0
GTEX-Y8E4-2226-SM-5LU94
5.5
GTEX-XPVG-2226-SM-4B65U
5.5
GTEX-1399Q-2826-SM-5IJEZ
4.3
GTEX-11WQK-2826-SM-5EQKH
3.4
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.