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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
66.8
nTPM
HPA Brain:
102.7
nTPM
GTEx:
66.8
nTPM
FANTOM5:
61.3
Scaled Tags Per Million
Mouse:
171.2
nTPM
Allen mouse:
8.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
102.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 95.9
2586
Male, age 75, left hemisphere
135.0
2666
Male, age 74, left hemisphere
112.0
1827
Male, age 72, unknown
104.6
2411
Female, age 72, unknown
97.3
2019
Male, age 18, unknown
96.7
2828
Female, age 72, unknown
94.7
1833
Male, age 53, unknown
82.6
1870
Female, age 42, unknown
82.1
1830
Male, age 51, unknown
79.8
2219
Male, age 76, both hemispheres
74.7
Dorsal raphe nucleus nTPM: 84.8
2298
Female, age 72, unknown
90.7
2750
Male, age 76, both hemispheres
89.2
2047
Male, age 72, unknown
86.8
1828
Male, age 53, unknown
83.8
2016
Female, age 72, unknown
73.4
Inferior colliculus nTPM: 76.5
2097
Female, age 72, unknown
83.8
1848
Female, age 42, unknown
75.1
2849
Male, age 72, unknown
73.6
1890
Male, age 53, unknown
73.5
Median raphe nucleus nTPM: 91.7
2220
Male, age 76, midline
91.7
Periaquaductal grey, anterior nTPM: 94.4
1795
Male, age 51, unknown
100.9
1947
Male, age 18, unknown
91.6
2502
Female, age 75, unknown
90.8
Periaquaductal grey, dorsal nTPM: 80.2
1831
Male, age 72, unknown
83.3
1840
Male, age 53, unknown
81.1
2464
Female, age 72, unknown
80.4
2850
Male, age 76, both hemispheres
75.9
Periaquaductal grey, lateral nTPM: 73.9
2053
Male, age 18, unknown
79.2
2140
Male, age 76, both hemispheres
74.3
2272
Male, age 74, both hemispheres
68.2
Pretectal area nTPM: 95.5
1817
Female, age 42, unknown
120.9
1816
Male, age 51, unknown
119.2
2007
Male, age 72, unknown
114.7
1815
Male, age 53, unknown
112.2
1944
Female, age 72, unknown
107.9
2407
Male, age 75, both hemispheres
89.3
2825
Male, age 18, unknown
81.3
2667
Female, age 75, unknown
80.8
2224
Female, age 72, unknown
79.6
2316
Male, age 76, right hemisphere
73.4
2273
Male, age 74, both hemispheres
71.5
Red nucleus nTPM: 84.0
2584
Male, age 75, left hemisphere
111.2
2785
Male, age 18, unknown
96.5
2725
Female, age 75, unknown
89.1
1821
Female, age 72, unknown
85.7
2588
Male, age 74, left hemisphere
85.7
2227
Male, age 72, unknown
81.0
1904
Male, age 53, unknown
79.5
2503
Female, age 72, unknown
78.3
1954
Female, age 42, unknown
77.9
2769
Male, age 72, unknown
77.2
1865
Male, age 51, unknown
76.6
2823
Male, age 76, right hemisphere
69.6
Substantia nigra nTPM: 102.7
1916
Female, age 42, unknown
124.0
1851
Male, age 51, unknown
112.9
2583
Male, age 75, right hemisphere
112.5
2665
Male, age 74, both hemispheres
111.9
1941
Male, age 53, unknown
109.0
1889
Female, age 72, unknown
100.9
2590
Female, age 75, unknown
97.4
2241
Male, age 72, unknown
90.0
2699
Male, age 18, unknown
89.5
2409
Female, age 72, unknown
78.8
Superior colliculus nTPM: 93.1
2664
Male, age 75, both hemispheres
115.8
2668
Female, age 75, unknown
108.8
2087
Female, age 72, unknown
99.6
2261
Male, age 18, unknown
98.1
1796
Male, age 53, unknown
95.2
2587
Male, age 74, left hemisphere
88.1
1913
Female, age 42, unknown
87.1
1839
Male, age 51, unknown
85.7
1995
Male, age 72, unknown
83.4
1895
Male, age 76, right hemisphere
69.5
Ventral tegmental area nTPM: 94.2
2410
Female, age 72, unknown
104.4
1915
Female, age 42, unknown
100.7
2218
Male, age 76, both hemispheres
97.0
2021
Male, age 53, unknown
88.3
2223
Female, age 72, unknown
88.0
1942
Male, age 51, unknown
86.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
66.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 66.8
Samples: 139
Max nTPM: 124.1
Min nTPM: 41.1
Std nTPM: 14.6
Median nTPM: 64.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
124.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
113.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
108.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
104.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
101.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
97.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
97.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
95.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
94.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
91.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
91.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
90.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
87.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
86.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
86.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
86.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
85.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
83.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
83.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
82.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
81.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
81.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
80.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
77.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
76.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
75.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
75.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
75.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
74.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
74.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
73.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
73.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
73.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
72.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
72.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
72.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
72.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
71.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
71.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
71.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
71.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
70.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
70.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
69.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
69.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
68.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
68.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
68.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
68.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
67.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
67.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
67.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
67.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
66.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
66.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
66.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
66.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
66.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
66.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
66.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
66.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
66.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
66.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
65.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
65.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
65.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
64.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
64.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
64.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
64.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
64.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
63.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
63.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
63.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
63.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
63.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
63.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
62.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
62.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
62.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
62.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
62.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
62.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
62.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
62.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
62.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
62.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
61.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
61.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
61.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
61.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
60.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
60.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
59.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
59.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
59.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
59.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
59.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
59.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
58.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
58.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
58.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
58.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
57.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
56.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
56.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
56.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
56.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
56.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
55.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
55.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
55.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
54.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
54.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
54.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
54.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
54.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
54.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
54.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
54.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
52.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
51.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
51.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
50.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
50.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
49.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
48.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
48.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
47.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
47.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
47.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
47.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
46.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
46.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
46.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
45.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
44.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
43.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
41.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
171.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 171.2
Samples: 4
Max nTPM: 182.1
Min nTPM: 163.4
Sample A
Male
182.1
Sample B
Male
163.4
Sample C
Female
175.5
Sample D
Female
163.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.