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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 338.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 337.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 325.0
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 574.5
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 1251.7
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 1255.4
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 708.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 254.6
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 381.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3582.1
Min RPKM: 4.2
Std RPKM: 396.5
Median RPKM: 99.8
GTEX-OOBJ-2126-SM-3NB1N
3582.1
GTEX-1399R-1626-SM-5P9GG
3160.9
GTEX-13OW6-0126-SM-5IJGM
1167.2
GTEX-13NYB-2226-SM-5MR58
1018.4
GTEX-YFCO-1726-SM-4W21S
835.7
GTEX-132QS-1226-SM-5P9GD
819.1
GTEX-YEC4-1526-SM-4W1YU
714.2
GTEX-11TT1-2226-SM-5GU6B
698.6
GTEX-QLQ7-1426-SM-4R1JX
683.9
GTEX-ZV7C-2026-SM-5NQ8F
648.9
GTEX-ZQUD-2026-SM-51MSM
643.5
GTEX-R55D-0126-SM-48FEL
582.6
GTEX-VJYA-1426-SM-4KL1Y
508.7
GTEX-ZVTK-0126-SM-57WDG
500.8
GTEX-XGQ4-2026-SM-4AT6G
486.9
GTEX-R55C-1426-SM-48FED
476.9
GTEX-YB5E-1926-SM-5IFIG
467.0
GTEX-11P7K-1026-SM-5HL6Y
465.7
GTEX-X3Y1-2626-SM-4PQZI
465.2
GTEX-ZT9W-2226-SM-57WFU
455.7
GTEX-145LT-0426-SM-5LUAP
440.4
GTEX-147JS-0126-SM-5S2TW
440.2
GTEX-ZYFC-0126-SM-5GIEH
430.4
GTEX-11OF3-1826-SM-5987N
406.0
GTEX-NFK9-0126-SM-3LK5H
393.4
GTEX-XQ3S-2726-SM-4BOP2
391.9
GTEX-11NSD-1026-SM-5N9BE
373.9
GTEX-XPVG-2226-SM-4B65U
367.8
GTEX-WVLH-2626-SM-4MVNV
361.9
GTEX-11NUK-2626-SM-5A5MB
358.7
GTEX-S95S-1126-SM-4B64E
351.8
GTEX-ZT9X-1426-SM-5DUX1
351.7
GTEX-QEG4-0126-SM-48TZE
339.7
GTEX-P4QS-2126-SM-3NMCF
332.5
GTEX-Q2AH-1526-SM-48TZG
329.4
GTEX-11TUW-2226-SM-5EQL9
327.8
GTEX-11ONC-2226-SM-5HL6D
325.1
GTEX-12C56-1426-SM-5FQSW
317.2
GTEX-11GS4-2026-SM-5N9CP
309.5
GTEX-ZPU1-2126-SM-57WED
277.7
GTEX-13112-0226-SM-5P9IV
269.6
GTEX-S3XE-1526-SM-4AD5A
261.8
GTEX-ZZ64-1126-SM-5GZXY
257.7
GTEX-ZA64-1626-SM-5CVME
249.2
GTEX-11WQC-2326-SM-5EQKE
239.6
GTEX-ZDTT-2026-SM-5K7TY
235.1
GTEX-ZDYS-1326-SM-5IJFF
234.8
GTEX-13N2G-0126-SM-5N9DV
233.3
GTEX-TKQ1-0926-SM-4DXU2
213.2
GTEX-13O61-2026-SM-5J2M6
200.8
GTEX-ZUA1-2726-SM-59HLJ
200.1
GTEX-11O72-0726-SM-5P9GO
196.9
GTEX-14753-0626-SM-5Q5CY
193.5
GTEX-12WSM-1326-SM-5GCP9
192.3
GTEX-ZVZP-2226-SM-57WBF
192.0
GTEX-144GL-0726-SM-5LU4P
183.2
GTEX-X261-2326-SM-4PQYU
182.2
GTEX-V955-1926-SM-4KL1L
171.8
GTEX-QV31-1126-SM-4R1K4
170.1
GTEX-WFON-2026-SM-4LVMW
169.7
GTEX-12WSI-2126-SM-5GCMV
168.7
GTEX-Y8E4-2226-SM-5LU94
168.5
GTEX-U8T8-1126-SM-4DXUE
163.4
GTEX-111FC-1926-SM-5GZYC
160.5
GTEX-S33H-0126-SM-4AD62
160.3
GTEX-R55E-0726-SM-48FCZ
159.1
GTEX-QMRM-1526-SM-4R1K6
156.9
GTEX-145MO-0126-SM-5S2QU
154.6
GTEX-Y111-2426-SM-4TT23
150.7
GTEX-T8EM-0126-SM-4DM5R
150.6
GTEX-XMK1-2026-SM-4B65K
150.1
GTEX-13OVH-0726-SM-5N9BU
145.8
GTEX-T5JC-0726-SM-4DM55
145.2
GTEX-147F4-0626-SM-5LUAK
138.5
GTEX-U3ZH-1526-SM-4DXV1
130.0
GTEX-N7MS-0126-SM-3TW8O
129.4
GTEX-12696-0226-SM-5EGL3
124.7
GTEX-14ABY-0626-SM-5Q5C9
121.4
GTEX-U4B1-1526-SM-4DXSL
119.0
GTEX-OXRL-2126-SM-3NM98
115.3
GTEX-RM2N-1326-SM-48FCW
109.3
GTEX-YF7O-2026-SM-4W1YE
104.8
GTEX-111CU-1726-SM-5EGHM
104.7
GTEX-RN64-2326-SM-48FDW
103.6
GTEX-XPT6-1626-SM-4B655
103.3
GTEX-S7SE-0326-SM-4AT5Q
101.4
GTEX-12ZZY-0126-SM-5LZV2
98.2
GTEX-RWSA-2426-SM-47JXR
96.8
GTEX-QEG5-0126-SM-4R1JR
93.8
GTEX-13NZB-2026-SM-5MR4M
92.3
GTEX-139TS-1726-SM-5IJG5
89.9
GTEX-13OVL-0426-SM-5IFG6
89.9
GTEX-OIZH-2126-SM-3NB1P
88.6
GTEX-T6MN-2026-SM-4DM7L
88.1
GTEX-SUCS-1326-SM-4DM5T
85.7
GTEX-139TT-2226-SM-5LZWO
84.4
GTEX-YEC3-1726-SM-5IFIK
82.6
GTEX-131XE-0426-SM-5IJF4
79.7
GTEX-SNMC-1026-SM-4DM7K
78.7
GTEX-U3ZM-1626-SM-4DXSK
76.7
GTEX-WH7G-1926-SM-4LVMM
76.4
GTEX-111VG-1926-SM-5GIDO
75.3
GTEX-13N1W-2626-SM-5IJEP
75.0
GTEX-13NZA-2526-SM-5IJFX
74.3
GTEX-U8XE-0126-SM-4E3I3
74.1
GTEX-WFG8-1926-SM-4LVM1
73.9
GTEX-13VXU-0726-SM-5J2O7
73.6
GTEX-13O21-1226-SM-5J2MK
71.4
GTEX-139T6-1226-SM-5IFFC
70.8
GTEX-QLQW-1026-SM-447A9
70.4
GTEX-OIZI-0126-SM-3NB13
68.2
GTEX-145MH-2326-SM-5O9AW
66.9
GTEX-WZTO-0326-SM-4PQYZ
64.7
GTEX-13111-1526-SM-5EGJX
64.4
GTEX-Q2AI-1226-SM-48U14
62.6
GTEX-SNOS-1126-SM-4DM67
62.3
GTEX-13FHP-2826-SM-5IJFW
60.3
GTEX-WOFM-1126-SM-4OOSB
59.8
GTEX-ZTSS-1526-SM-51MTC
59.3
GTEX-QV44-1726-SM-4R1KG
58.9
GTEX-11ZUS-2726-SM-5FQUA
58.6
GTEX-RUSQ-2126-SM-47JXK
57.2
GTEX-1212Z-0326-SM-5FQSJ
56.5
GTEX-13FTW-1326-SM-5LZZD
56.2
GTEX-144GM-0426-SM-5Q5C8
55.9
GTEX-111YS-2026-SM-5EGGL
55.4
GTEX-ZYT6-2726-SM-5GICP
54.4
GTEX-S4Q7-1226-SM-4AD5I
54.2
GTEX-UPJH-0126-SM-4IHLL
53.8
GTEX-V1D1-2126-SM-4JBH4
53.7
GTEX-Z93S-1726-SM-5HL8G
52.7
GTEX-144GN-1626-SM-5Q5BU
52.7
GTEX-XBED-2026-SM-4AT5D
52.6
GTEX-12WSH-0326-SM-5GCNH
51.4
GTEX-WHSB-2126-SM-4M1XF
50.7
GTEX-117YW-1526-SM-5EGGP
47.6
GTEX-ZAB5-2426-SM-5CVMW
46.9
GTEX-PLZ5-1526-SM-3P5ZX
46.0
GTEX-Y9LG-1726-SM-4VBQE
44.7
GTEX-11EI6-2226-SM-5EGJM
44.0
GTEX-O5YT-2126-SM-3MJGD
42.5
GTEX-Y5V6-1726-SM-4VDSZ
41.2
GTEX-OHPM-2126-SM-3LK75
40.3
GTEX-WK11-0326-SM-4OOS6
39.6
GTEX-ZTX8-1126-SM-51MRM
39.6
GTEX-S7PM-0626-SM-4AD4Q
38.3
GTEX-11DXZ-2126-SM-59881
37.9
GTEX-11NV4-1726-SM-5N9FC
37.7
GTEX-11LCK-2326-SM-5HL53
36.6
GTEX-PW2O-1426-SM-48TCD
36.1
GTEX-XBEC-0126-SM-4GIDT
35.8
GTEX-12WSL-2326-SM-5DUXQ
35.5
GTEX-OOBK-2126-SM-3LK5T
35.0
GTEX-X5EB-2026-SM-4E3KA
34.1
GTEX-14A6H-2326-SM-5Q5B5
33.5
GTEX-TKQ2-1526-SM-4DXUN
31.0
GTEX-YJ89-0626-SM-4TT3Z
30.4
GTEX-117XS-2026-SM-5GID1
29.0
GTEX-P4QR-0226-SM-3NMCH
28.3
GTEX-13O1R-0726-SM-5IJEI
28.1
GTEX-11EQ9-1926-SM-5PNVV
27.5
GTEX-11P82-1526-SM-5BC5M
27.3
GTEX-XAJ8-1326-SM-47JYT
24.0
GTEX-13OW5-2526-SM-5L3I1
19.4
GTEX-1339X-1926-SM-5PNVP
18.6
GTEX-1399Q-2826-SM-5IJEZ
17.3
GTEX-REY6-0126-SM-48FDT
16.4
GTEX-XLM4-1526-SM-4AT6D
12.6
GTEX-11WQK-2826-SM-5EQKH
9.1
GTEX-11EQ8-1426-SM-5EGJR
7.7
GTEX-13FLW-2126-SM-5N9FD
5.5
GTEX-ZAB4-0126-SM-5CVMG
4.2
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.