THE HUMAN PROTEIN ATLAS BLOG

Conference - keynote lecture at Europe-Korea Conference on Science and Technology

2017-07-15
Drug development Human Protein Atlas

Mathias Uhlen from the Human Protein Atlas will on July the 27 present a keynote lecture on the Europe-Korea Conference on Science and Technology (EKC2017) entitled "The Human Protein Atlas - implications for human biology, drug development and precision medicine"...Read more


The Human Cell Atlas selected as one of 10 emerging technologies to make a change to society

2017-06-27
Cell Atlas Human Protein Atlas Technologies

This week, Scientific American announced ten emerging technologies with innovations that are on the verge of changing society. One of the technologies selected was the Human Cell Atlas, which aims to integrate research exploring the building-blocks of human cells using new emerging technologies. The list of ten emerging technologies was compiled in a collaboration between Scientific American and the World Economic Forum's Expert Network with suggestions from members of the Expert Network, the forum's Global Future Councils and Scientific American's board of advisers...Read more


Conference - keynote lecture at CYTO2017 in Boston

2017-06-12
Cell Atlas CYTO2017 Human Protein Atlas Single cell analysis

Emma Lundberg Director of the Human Cell Atlas, will present a keynote lecture on June 14th, entitled ”The Cell Atlas: A subcellular map of the human proteome” on the 32ndCongress of the International Society for Advancement of Cytometry in Boston, USA.

On this occassion, the CYTO Congress together with the Human Protein Atlas have organized a challenge for analysis of the images from the Cell Atlas, culminating in presentation of results in the final conference session, where participants will present their analytical methods and findings...Read more


Keynote lecture - 6th Pharmaceutical Science World

2017-05-19
Drug development Human Protein Atlas

  

Mathias Uhlen, Director of the Human Protein Atlas program, will present a keynote lecture on May 23 entitled "Tissue-based protein profiles – implications for human biology, drug development and precision medicine " on the 6th Pharmaceutical Science World Congress (PSWC 2017) in Stockholm, Sweden.

The focus of this year´s world congress will be " Future medicine for one world " including research and development related to systems approaches to drug discovery development and clinical usage...Read more


Meet the site director

2017-02-07
Antibody Human Protein Atlas Secretome

Hanna Tegel

Today we meet Hanna Tegel, site director at the AlbaNova site of the Human Protein Atlas, and group leader of the Antigen and Antibody Factory group. She has been with the Human Protein Atlas from the very beginning, and her career has evolved alongside the project.

– I took my M.Sc. in biotechnology at KTH – the Royal Institute of Technology here in Stockholm, and in the end of my education I complemented it with some physiology at the Karolinska Institute. As a part of this course I did a project at KTH, and when it was time for me to do my masters thesis I turned to the same professor. Now he was involved in the start-up of the Human Protein Atlas project...Read more


On childhood asthma and protein profiles in plasma

2016-05-24
Antibody Suspension Bead Array Asthma Human Protein Atlas Plasma

Protein levels of CCL5, HPGDS and NPSR1 in plasma

In a recent publication in European Journal of Allergy and Clinical Immunology, researchers use an affinity proteomics approach to analyze plasma profiles of a 362 proteins in 154 children with persistent or intermittent asthma and controls. To this end, antibody suspension bead arrays developed within the Human Protein Atlas was used.

Asthma is a common chronic childhood disease with many different phenotypes that need to be identified. Asthma affects approximately 300 million people worldwide and is characterized by bronchial hyperresponsiveness and reversible expiratory airflow limitation...Read more


Site director with a fascination for patterns

2016-05-16
Human Protein Atlas Immunocytochemistry Interview Microarray Proteomics RNA-seq Tissue Atlas

Cecilia Lindskog, site director of the Tissue Atlas

Time has come for the second interview with a researcher within the Human Protein Atlas project. Today we meet Cecilia Lindskog, site director of the Tissue Atlas.

– I have a Master of Science in Biomedicine and a Doctor of Philosophy in pathology from the Faculty of Medicine, Uppsala University. I joined the Human Protein Atlas project in 2006, and also have industry experience in the biotechnology industry, from Oncomark Ltd, Dublin, Ireland.

Cecilia Lindskog´s main research interests have always been understanding the biology and functions of different organs, and the underlying mechanisms leading to cancer and other diseases...Read more


Aquaporin 9 expression in human tissue

2016-05-10
Hepatocellular Carcinoma Human Protein Atlas Liver Tissue Atlas

Protein expression of aquaporin 9 in normal tissues

In a very recent paper in Journal of Histochemistry and Cytochemistry , with researchers from the Human Protein Atlas, it is shown that the expression of aquaporin 9 is limited in normal tissues, and high membranous expression is observed only in hepatocytes.

Aquaporin 9 is known to facilitate hepatocyte glycerol uptake. Murine aquaporin 9 protein expression has been verified in liver, skin, epididymis, epidermis and neuronal cells using knockout mice.

One goal of the current study was to systematically explore the distribution of aquaporin 9 expression in humans...Read more


Meet the author: Mingdong Zhang

2016-05-03
Human Protein Atlas Mouse Brain Atlas Spinal Cord

Mingdong Zhang

As a follow up from last week´s blog post, on Jan Mulder and his work, we now present the most recent publication from his lab, on the anatomical distribution of neuronal calcium-binding proteins 1 and 2 (NECAB1/2) in rodent and human spinal cord.

Mingdong Zhang is the first author of the study and a PhD student registered in the Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics (MBB) at Karolinska Institutet.

– But much of my actual work is carried out in the Department of Neuroscience...Read more


Analysis of 32 human organs and tissues

2016-04-20
Brain Human Protein Atlas Testis Tissue Atlas

A network plot of the tissue enriched (red) and group enriched (orange) genes

In the Human Protein Atlas, there are 32 human organs and tissues analyzed. 2489 of the genes have significantly higher expression in one tissue compared to all other tissue types. Analysis show that testis is the organ with the largest number of tissue-enriched genes, with 1057 genes classified as testis enriched. The specific events and alterations of cell structure during spermatogenesis, and the fact that sperm has the ability to survive outside the male body may explain why testis has the largest number of enriched genes.

The organ with the second highest number of enriched genes is the brain with 381 enriched genes...Read more


Project Discovery - Day 1 results

2016-03-16
CCP Citizen Science EVE Online Human Protein Atlas MMOS Project Discovery Proteome

Fig. 1. Confusion matrix of gamer predictions versus HPA predictions. Here columns represent votes of gamers. Confusions occurring with a frequency below 1% are set to black for clarity.

Thanks Science Fans!

The response to Project Discovery has been amazing and overwhelming. You have taken to the game in a way none of us expected. Keep it up!

First, in an effort to stream line our interactions with you we have created a number of official social media outlets:

EVE forums: We have a number of official accounts we will respond to questions with.Twitter: HPA_Discovery - dedicated to posting updates, announcements and all things Project Discovery. Twitter is severely character limited so it's difficult to answer questions there.Reddits: /r/EVE and /r/projectdiscovery - We will be here for support as well...Read more