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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
469.3
nTPM
Monaco:
1917.9
nTPM
Schmiedel:
1340.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
469.3
HPA sample
nTPM
Classical monocyte nTPM: 381.5
Samples: 6
Max nTPM: 744.7
Min nTPM: 247.0
P10809_1003
744.7
P10809_1020
364.7
P10809_1039
274.6
P10809_1058
247.0
P10809_1080
328.5
P10809_1107
329.7
Intermediate monocyte nTPM: 469.3
Samples: 6
Max nTPM: 565.7
Min nTPM: 323.0
P10809_1004
532.8
P10809_1023
504.9
P10809_1042
565.7
P10809_1061
495.2
P10809_1081
323.0
P10809_1108
394.0
Non-classical monocyte nTPM: 406.9
Samples: 5
Max nTPM: 523.5
Min nTPM: 259.4
P10809_1005
523.5
P10809_1053
469.5
P10809_1072
418.4
P10809_1082
259.4
P10809_1109
363.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1917.9
Monaco sample
nTPM
Classical monocyte nTPM: 1591.6
Samples: 4
Max nTPM: 1709.2
Min nTPM: 1459.5
RHH5313_R3680
1709.2
RHH5221_R3593
1685.3
RHH5250_R3622
1512.4
RHH5279_R3651
1459.5
Intermediate monocyte nTPM: 1917.9
Samples: 4
Max nTPM: 1961.7
Min nTPM: 1858.4
RHH5314_R3681
1858.4
RHH5222_R3594
1904.7
RHH5251_R3623
1961.7
RHH5280_R3652
1946.7
Non-classical monocyte nTPM: 1717.0
Samples: 4
Max nTPM: 1907.9
Min nTPM: 1537.9
RHH5315_R3682
1849.2
RHH5223_R3595
1537.9
RHH5252_R3624
1907.9
RHH5281_R3653
1573.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
