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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
51.4
nTPM
GTEx:
27.7
nTPM
FANTOM5:
63.4
Scaled Tags Per Million
Pig:
107.3
nTPM
SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.4
Sample id
Sample description
nTPM
Substantia nigra nTPM: 51.4
1916
Female, age 42, unknown
71.1
1889
Female, age 72, unknown
67.6
1941
Male, age 53, unknown
66.9
2241
Male, age 72, unknown
66.8
1851
Male, age 51, unknown
50.7
2699
Male, age 18, unknown
39.3
2409
Female, age 72, unknown
38.9
2590
Female, age 75, unknown
37.8
2665
Male, age 74, both hemispheres
37.5
2583
Male, age 75, right hemisphere
36.9
SUBSTANTIA NIGRA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 27.7
Samples: 139
Max nTPM: 59.2
Min nTPM: 11.1
Std nTPM: 10.0
Median nTPM: 26.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
59.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
58.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
55.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
52.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
49.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
48.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
46.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
45.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
45.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
45.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
42.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
42.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
41.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
41.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
40.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
40.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
39.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
39.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
38.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
38.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
38.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
38.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
37.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
37.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
36.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
34.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
33.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
33.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
33.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
33.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
32.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
32.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
32.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
31.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
31.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
31.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
31.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
31.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
30.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
30.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
30.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
29.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
29.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
29.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
29.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
29.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
28.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
28.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
28.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
28.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
28.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
27.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
27.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
27.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
27.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
27.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
26.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
26.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
26.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
26.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
26.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
26.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
26.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
26.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
25.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
25.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
25.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
25.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
25.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
25.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
24.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
24.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
23.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
23.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
23.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
23.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
23.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
23.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
22.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
22.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
22.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
22.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
22.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
22.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
21.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
21.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
21.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
21.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
21.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
20.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
20.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
20.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
20.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
20.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
19.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
19.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
19.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
19.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
18.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
17.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
17.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
17.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
17.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
16.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
16.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
15.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
15.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
15.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
14.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
13.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
13.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.1
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SUBSTANTIA NIGRA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.