Expression of CD99 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

CD99 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 264.47

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

219.7

Number of samples

362

Samples

Sample	Description	pTPM
TCGA-G3-AAV7-01A	38 years, male, asian, stage:Stage II, alive, 361 days	920.0
TCGA-CC-A7IJ-01A	56 years, male, asian, stage:Stage II, alive, 382 days	793.0
TCGA-ED-A459-01A	47 years, male, asian, stage:Stage II, alive, 910 days	650.1
TCGA-CC-A3M9-01A	45 years, male, asian, stage:Stage IIIA, dead, 300 days	638.9
TCGA-EP-A3RK-01A	73 years, male, white, stage:Stage IIIA, alive, 363 days	561.3
TCGA-DD-AACF-01A	68 years, male, asian, stage:Stage I, dead, 365 days	543.2
TCGA-5R-AA1C-01A	57 years, male, white, stage:Stage II, alive, 520 days	506.0
TCGA-DD-AAVP-01A	48 years, male, asian, stage:Stage I, alive, 2752 days	488.1
TCGA-2Y-A9GS-01A	58 years, male, white, stage:'--, dead, 724 days	483.6
TCGA-DD-AAC8-01A	72 years, male, asian, stage:Stage I, dead, 16 days	460.4
TCGA-DD-AAEE-01A	55 years, male, asian, stage:Stage I, alive, 810 days	459.0
TCGA-DD-AAE9-01A	69 years, male, asian, stage:Stage I, alive, 722 days	457.9
TCGA-YA-A8S7-01A	68 years, male, white, stage:Stage IIIA, dead, 412 days	456.8
TCGA-DD-AADC-01A	53 years, male, asian, stage:Stage I, dead, 425 days	455.3
TCGA-DD-A1EA-01A	68 years, male, asian, stage:Stage II, alive, 2415 days	443.3
TCGA-DD-AAVU-01A	46 years, male, asian, stage:Stage II, alive, 2202 days	440.0
TCGA-DD-AACV-01A	53 years, male, asian, stage:Stage I, alive, 1531 days	438.3
TCGA-G3-A25X-01A	73 years, male, asian, stage:Stage II, alive, 1779 days	435.3
TCGA-BC-A5W4-01A	69 years, male, white, stage:Stage IIIA, dead, 547 days	433.4
TCGA-CC-A8HU-01A	39 years, female, asian, stage:Stage IIIA, dead, 344 days	432.5
TCGA-DD-A114-01A	42 years, male, black or african american, stage:Stage II, dead, 1149 days	427.9
TCGA-UB-A7MD-01A	67 years, male, black or african american, stage:Stage I, dead, 52 days	412.6
TCGA-UB-A7MF-01A	56 years, male, white, stage:Stage IIIA, dead, 214 days	412.3
TCGA-PD-A5DF-01A	58 years, female, white, stage:Stage IIIB, dead, 639 days	411.6
TCGA-DD-A4NH-01A	65 years, female, white, stage:Stage IIIB, alive, 917 days	410.7
TCGA-G3-AAV6-01A	53 years, female, white, stage:Stage IIIA, dead, 65 days	410.6
TCGA-DD-A3A6-01A	72 years, female, white, stage:Stage II, dead, 3258 days	403.4
TCGA-DD-AADP-01A	45 years, male, asian, stage:Stage I, alive, 458 days	373.1
TCGA-DD-A73E-01A	66 years, male, white, stage:Stage I, alive, 44 days	372.4
TCGA-ZP-A9D1-01A	56 years, female, white, stage:'--, alive, 21 days	371.3
TCGA-DD-AAVS-01A	56 years, male, asian, stage:Stage I, alive, 1823 days	366.9
TCGA-ED-A7XO-01A	29 years, male, asian, stage:Stage IIIA, alive, 427 days	366.2
TCGA-G3-AAV2-01A	50 years, male, white, stage:Stage I, alive, 372 days	365.8
TCGA-BC-A10Y-01A	76 years, male, white, stage:'--, dead, 711 days	361.8
TCGA-GJ-A6C0-01A	75 years, female, white, stage:Stage II, dead, 31 days	361.5
TCGA-DD-A1EB-01A	72 years, female, stage:Stage I, alive, 2017 days	359.0
TCGA-GJ-A9DB-01A	68 years, male, white, stage:Stage I, dead, 67 days	352.8
TCGA-CC-5262-01A	67 years, male, asian, stage:Stage IIIC, dead, 103 days	345.3
TCGA-BC-A217-01A	75 years, female, white, stage:Stage II, dead, 1397 days	340.2
TCGA-CC-5263-01A	35 years, male, asian, stage:Stage IIIA, dead, 129 days	340.0
TCGA-UB-A7MC-01A	59 years, male, white, stage:Stage IIIA, alive, 500 days	337.5
TCGA-UB-A7MB-01A	24 years, male, white, stage:Stage II, alive, 601 days	335.7
TCGA-G3-A5SI-01A	44 years, male, asian, stage:Stage II, dead, 768 days	335.0
TCGA-CC-A7IH-01A	58 years, male, asian, stage:Stage IIIA, alive, 365 days	332.5
TCGA-DD-AADJ-01A	70 years, female, asian, stage:Stage I, alive, 1066 days	332.0
TCGA-DD-AACH-01A	69 years, male, asian, stage:Stage II, dead, 195 days	329.0
TCGA-DD-AACP-01A	64 years, male, asian, stage:Stage I, alive, 415 days	327.0
TCGA-DD-AACA-01A	65 years, male, asian, stage:Stage I, alive, 2301 days	324.2
TCGA-DD-A1EH-01A	23 years, male, white, stage:Stage III, alive, 1495 days	323.0
TCGA-CC-5264-01A	71 years, male, asian, stage:Stage IIIA, dead, 102 days	322.7
TCGA-DD-AADR-01A	58 years, male, asian, stage:Stage I, alive, 2028 days	321.6
TCGA-DD-A1EL-01A	23 years, male, black or african american, stage:Stage II, dead, 415 days	321.3
TCGA-XR-A8TE-01A	16 years, male, white, stage:Stage IIIA, alive, 925 days	319.8
TCGA-CC-A9FW-01A	68 years, male, asian, stage:Stage IIIA, alive, 248 days	317.4
TCGA-DD-AADW-01A	48 years, male, asian, stage:Stage I, alive, 587 days	316.9
TCGA-G3-A3CK-01A	61 years, male, asian, stage:Stage I, alive, 585 days	316.1
TCGA-ED-A5KG-01A	60 years, female, asian, stage:Stage II, alive, 854 days	314.6
TCGA-2Y-A9GY-01A	64 years, female, white, stage:Stage II, dead, 757 days	312.9
TCGA-CC-A5UE-01A	48 years, male, asian, stage:Stage IIIB, dead, 272 days	312.4
TCGA-FV-A3I1-01A	81 years, female, white, stage:Stage II, dead, 247 days	312.1
TCGA-CC-A7IG-01A	47 years, male, asian, stage:Stage II, dead, 299 days	311.7
TCGA-CC-A7II-01A	54 years, male, asian, stage:Stage IIIA, alive, 399 days	308.1
TCGA-BC-A10Q-01A	72 years, female, white, stage:'--, dead, 1135 days	307.4
TCGA-FV-A3R2-01A	75 years, male, white, stage:Stage I, dead, 194 days	302.6
TCGA-FV-A2QR-01A	75 years, male, white, stage:Stage I, dead, 581 days	300.9
TCGA-BC-A10U-01A	69 years, male, white, stage:'--, dead, 837 days	300.7
TCGA-BC-A69I-01A	69 years, male, white, stage:Stage I, alive, 387 days	300.1
TCGA-2Y-A9H0-01A	49 years, male, white, stage:Stage IIIA, alive, 3675 days	299.2
TCGA-CC-A1HT-01A	50 years, male, asian, stage:Stage IIIA, dead, 101 days	296.5
TCGA-DD-A4NO-01A	65 years, male, white, stage:Stage I, alive, 2245 days	296.4
TCGA-FV-A4ZQ-01A	52 years, male, white, stage:Stage I, alive, 12 days	296.1
TCGA-DD-AADV-01A	50 years, male, asian, stage:Stage I, alive, 574 days	294.7
TCGA-FV-A3R3-01A	38 years, female, white, stage:Stage I, dead, 366 days	291.6
TCGA-G3-AAV1-01A	51 years, male, asian, stage:Stage IIIC, dead, 359 days	291.5
TCGA-G3-A3CG-01A	80 years, male, white, stage:Stage I, alive, 673 days	291.0
TCGA-KR-A7K0-01A	65 years, male, white, stage:Stage I, dead, 65 days	290.6
TCGA-CC-A7IK-01A	59 years, male, asian, stage:Stage IIIA, dead, 262 days	288.0
TCGA-CC-A3MB-01A	36 years, male, asian, stage:Stage IIIA, dead, 315 days	286.3
TCGA-DD-A39Y-01A	67 years, male, asian, stage:Stage I, dead, 171 days	286.2
TCGA-XR-A8TF-01A	74 years, male, white, stage:Stage I, dead, 693 days	285.7
TCGA-G3-A25Y-01A	52 years, female, asian, stage:Stage I, dead, 452 days	285.5
TCGA-DD-AAED-01A	51 years, male, asian, stage:Stage I, alive, 763 days	284.4
TCGA-BC-A3KG-01A	68 years, female, white, stage:Stage II, alive, 680 days	282.7
TCGA-DD-AACU-01A	59 years, male, asian, stage:Stage I, alive, 1567 days	282.7
TCGA-ZP-A9CZ-01A	72 years, male, asian, stage:'--, alive, 706 days	281.7
TCGA-HP-A5MZ-01A	78 years, male, stage:Stage I, dead, 91 days	280.7
TCGA-LG-A6GG-01A	79 years, female, white, stage:Stage II, alive, 387 days	280.5
TCGA-ZP-A9D2-01A	51 years, male, white, stage:'--, dead, 765 days	278.4
TCGA-DD-AACW-01A	43 years, male, asian, stage:Stage I, alive, 1424 days	277.5
TCGA-5C-AAPD-01A	61 years, male, asian, stage:Stage II, alive, 20 days	273.9
TCGA-DD-AADD-01A	51 years, male, asian, stage:Stage I, alive, 1231 days	272.2
TCGA-CC-5261-01A	44 years, male, asian, stage:Stage II, dead, 97 days	271.8
TCGA-2Y-A9H9-01A	70 years, male, white, stage:Stage I, alive, 697 days	269.9
TCGA-2Y-A9HA-01A	70 years, male, white, stage:Stage II, dead, 36 days	269.4
TCGA-DD-AAD0-01A	73 years, female, asian, stage:Stage I, alive, 137 days	268.3
TCGA-DD-A1EG-01A	76 years, male, white, stage:Stage I, dead, 1372 days	268.3
TCGA-XR-A8TG-01A	58 years, male, white, stage:Stage I, alive, 898 days	267.7
TCGA-QA-A7B7-01A	48 years, male, black or african american, stage:Stage II, alive, 94 days	266.6
TCGA-BC-A10W-01A	50 years, male, asian, stage:'--, dead, 91 days	265.0
TCGA-DD-A4NF-01A	72 years, male, white, stage:Stage I, alive, 942 days	264.7
TCGA-DD-A39V-01A	77 years, male, white, stage:Stage II, dead, 643 days	264.6
TCGA-FV-A2QQ-01A	80 years, male, white, stage:Stage I, alive, 729 days	264.3
TCGA-FV-A23B-01A	70 years, female, white, stage:Stage II, dead, 1852 days	261.0
TCGA-DD-AAVV-01A	56 years, male, asian, stage:Stage II, alive, 2455 days	257.2
TCGA-DD-A115-01A	53 years, male, white, stage:Stage IIIA, dead, 2542 days	255.4
TCGA-BW-A5NO-01A	50 years, male, black or african american, stage:Stage IIIA, alive, 20 days	253.6
TCGA-EP-A2KC-01A	62 years, male, black or african american, stage:Stage I, dead, 19 days	252.5
TCGA-DD-A73C-01A	65 years, female, white, stage:Stage IIIA, alive, 701 days	248.4
TCGA-RC-A7SB-01A	53 years, male, asian, stage:Stage II, alive, 588 days	245.8
TCGA-MI-A75I-01A	61 years, male, black or african american, stage:'--, alive, 630 days	244.8
TCGA-DD-AADI-01A	43 years, female, asian, stage:Stage I, alive, 1085 days	242.4
TCGA-CC-A8HS-01A	18 years, male, asian, stage:Stage IIIC, dead, 300 days	239.8
TCGA-DD-A39W-01A	29 years, female, white, stage:Stage III, dead, 827 days	239.6
TCGA-G3-A5SM-01A	58 years, male, white, stage:Stage II, alive, 520 days	235.8
TCGA-G3-AAV5-01A	67 years, male, white, stage:Stage II, alive, 354 days	235.3
TCGA-G3-A6UC-01A	65 years, male, white, stage:Stage IIIB, alive, 671 days	234.8
TCGA-ED-A7XP-01A	53 years, female, asian, stage:Stage II, alive, 400 days	234.6
TCGA-RC-A6M6-01A	75 years, male, white, stage:Stage II, alive, 9 days	232.0
TCGA-DD-AAVW-01A	35 years, male, asian, stage:Stage I, alive, 2317 days	231.8
TCGA-DD-AACO-01A	40 years, male, asian, stage:Stage I, alive, 1876 days	228.9
TCGA-ED-A627-01A	74 years, male, white, stage:Stage I, alive, 423 days	228.6
TCGA-XR-A8TC-01A	43 years, female, white, stage:Stage I, alive, 1339 days	228.6
TCGA-XR-A8TD-01A	49 years, female, white, stage:Stage IIIB, alive, 1030 days	228.2
TCGA-CC-A3MC-01A	54 years, male, asian, stage:Stage IIIA, alive, 363 days	228.1
TCGA-DD-A4NP-01A	32 years, male, white, stage:Stage I, alive, 3308 days	226.8
TCGA-WJ-A86L-01A	68 years, female, white, stage:Stage I, alive, 345 days	225.2
TCGA-CC-A7IF-01A	59 years, male, asian, stage:Stage IIIA, dead, 649 days	225.0
TCGA-DD-AADM-01A	58 years, male, asian, stage:Stage II, dead, 12 days	224.3
TCGA-UB-A7MA-01A	62 years, female, white, stage:Stage II, alive, 848 days	224.2
TCGA-BC-A10R-01A	66 years, female, white, stage:'--, dead, 308 days	224.1
TCGA-WQ-AB4B-01A	62 years, male, white, stage:Stage II, alive, 395 days	222.6
TCGA-ZS-A9CG-01A	55 years, male, white, stage:Stage II, alive, 341 days	222.4
TCGA-GJ-A3OU-01A	59 years, male, white, stage:Stage I, alive, 879 days	221.6
TCGA-CC-5260-01A	61 years, female, asian, stage:Stage IIIC, dead, 87 days	220.1
TCGA-K7-AAU7-01A	61 years, male, white, stage:Stage II, alive, 359 days	218.6
TCGA-DD-A118-01A	77 years, female, white, stage:Stage II, alive, 3437 days	218.4
TCGA-EP-A2KB-01A	46 years, female, white, stage:Stage I, dead, 596 days	218.2
TCGA-ES-A2HT-01A	54 years, male, black or african american, stage:Stage I, dead, 438 days	218.1
TCGA-CC-A7IL-01A	61 years, male, asian, stage:Stage IIIA, dead, 278 days	218.1
TCGA-DD-AACX-01A	66 years, male, asian, stage:Stage II, alive, 170 days	217.6
TCGA-K7-A5RG-01A	66 years, male, black or african american, stage:Stage I, alive, 519 days	217.3
TCGA-G3-A25T-01A	45 years, female, white, stage:Stage IIIA, alive, 1553 days	215.8
TCGA-5C-A9VH-01A	70 years, male, white, stage:Stage I, alive, 322 days	215.8
TCGA-DD-AAW1-01A	55 years, male, asian, stage:Stage IIIA, alive, 1989 days	215.8
TCGA-ED-A97K-01A	54 years, male, asian, stage:Stage IIIA, alive, 6 days	215.3
TCGA-NI-A8LF-01A	74 years, male, white, stage:Stage I, alive, 799 days	214.6
TCGA-ZP-A9D0-01A	67 years, female, black or african american, stage:'--, alive, 1091 days	214.0
TCGA-3K-AAZ8-01A	65 years, male, black or african american, stage:Stage IIIB, alive, 396 days	213.1
TCGA-DD-AAEI-01A	72 years, male, asian, stage:Stage I, alive, 1531 days	212.9
TCGA-2Y-A9GX-01A	68 years, male, white, stage:Stage I, alive, 2442 days	212.5
TCGA-WX-AA44-01A	64 years, female, white, stage:Stage I, alive, 615 days	212.3
TCGA-DD-AACG-01A	52 years, male, asian, stage:Stage II, dead, 469 days	212.2
TCGA-DD-A11B-01A	73 years, male, white, stage:Stage I, dead, 14 days	211.5
TCGA-DD-AAVR-01A	44 years, male, asian, stage:Stage I, alive, 2513 days	211.2
TCGA-DD-AAE3-01A	50 years, male, asian, stage:Stage I, alive, 566 days	210.8
TCGA-DD-AACL-01A	66 years, female, asian, stage:Stage I, dead, 107 days	210.6
TCGA-DD-AACQ-01A	50 years, male, asian, stage:Stage II, dead, 432 days	210.1
TCGA-DD-AAEK-01A	51 years, male, asian, stage:Stage II, alive, 1067 days	208.8
TCGA-KR-A7K8-01A	57 years, male, stage:Stage I, alive, 906 days	208.7
TCGA-ZS-A9CF-01A	64 years, male, white, stage:Stage II, alive, 2412 days	207.8
TCGA-ED-A7PX-01A	48 years, female, asian, stage:Stage II, alive, 6 days	207.7
TCGA-DD-AAVQ-01A	38 years, male, asian, stage:Stage I, alive, 2728 days	207.6
TCGA-DD-A4NJ-01A	54 years, female, white, stage:Stage II, alive, 928 days	207.3
TCGA-DD-A3A5-01A	66 years, female, white, stage:Stage III, dead, 3125 days	207.2
TCGA-DD-AACN-01A	32 years, male, asian, stage:Stage I, alive, 1302 days	206.3
TCGA-DD-A73G-01A	73 years, female, white, stage:Stage I, alive, 3478 days	206.3
TCGA-2Y-A9H5-01A	59 years, female, white, stage:Stage I, dead, 555 days	206.2
TCGA-KR-A7K2-01A	64 years, male, white, stage:Stage I, alive, 829 days	206.1
TCGA-DD-A4NB-01A	25 years, male, white, stage:Stage I, alive, 989 days	205.8
TCGA-DD-A4NN-01A	56 years, female, white, stage:Stage I, dead, 899 days	205.8
TCGA-DD-A119-01A	40 years, male, asian, stage:Stage IV, dead, 223 days	205.5
TCGA-DD-AAD3-01A	43 years, male, asian, stage:Stage I, alive, 1295 days	204.5
TCGA-DD-A1EE-01A	73 years, male, white, stage:Stage IIIA, dead, 349 days	203.4
TCGA-DD-AADY-01A	55 years, female, asian, stage:Stage I, alive, 555 days	203.1
TCGA-ED-A7PY-01A	20 years, female, asian, stage:Stage II, alive, 390 days	200.4
TCGA-UB-A7ME-01A	51 years, male, asian, stage:Stage I, alive, 486 days	199.9
TCGA-RG-A7D4-01A	69 years, male, black or african american, stage:Stage II, alive, 1098 days	198.8
TCGA-DD-AAEA-01A	65 years, male, asian, stage:Stage I, alive, 575 days	198.2
TCGA-DD-AADQ-01A	59 years, male, asian, stage:Stage II, alive, 436 days	198.0
TCGA-DD-A11D-01A	57 years, female, white, stage:Stage I, dead, 1560 days	197.9
TCGA-DD-A1EI-01A	46 years, male, asian, stage:Stage I, alive, 183 days	197.9
TCGA-DD-A3A8-01A	75 years, male, white, stage:Stage II, dead, 11 days	197.4
TCGA-CC-A123-01A	24 years, female, asian, stage:Stage IIIA, alive, 219 days	197.4
TCGA-2Y-A9H8-01A	85 years, female, white, stage:'--, dead, 633 days	196.0
TCGA-ZP-A9CY-01A	66 years, female, white, stage:'--, alive, 782 days	195.7
TCGA-DD-A73B-01A	72 years, female, white, stage:Stage I, dead, 283 days	194.5
TCGA-DD-AACJ-01A	75 years, male, asian, stage:Stage II, alive, 2102 days	194.5
TCGA-BC-A10Z-01A	62 years, female, white, stage:Stage I, dead, 34 days	193.6
TCGA-DD-A3A1-01A	65 years, male, stage:Stage IIIA, dead, 233 days	191.7
TCGA-DD-A73F-01A	77 years, female, white, stage:Stage I, alive, 1085 days	190.7
TCGA-RC-A7SK-01A	59 years, male, asian, stage:Stage I, alive, 472 days	188.6
TCGA-DD-A1EK-01A	64 years, female, white, stage:Stage IVB, dead, 558 days	187.6
TCGA-BD-A2L6-01A	69 years, male, white, stage:'--, alive, 1363 days	187.6
TCGA-DD-A4NS-01A	61 years, female, white, stage:Stage I, dead, 2456 days	186.7
TCGA-DD-A1ED-01A	68 years, male, white, stage:Stage I, alive, 2301 days	186.2
TCGA-DD-A3A9-01A	64 years, female, white, stage:Stage IVB, dead, 931 days	186.1
TCGA-NI-A4U2-01A	71 years, male, white, stage:Stage IIIA, dead, 1791 days	185.9
TCGA-DD-AA3A-01A	81 years, female, white, stage:Stage I, dead, 410 days	185.5
TCGA-DD-A1EJ-01A	71 years, female, white, stage:Stage IIIC, dead, 1005 days	185.4
TCGA-WX-AA47-01A	33 years, female, white, stage:Stage IIIA, dead, 556 days	185.1
TCGA-KR-A7K7-01A	61 years, female, white, stage:Stage II, alive, 951 days	185.0
TCGA-DD-AACB-01A	74 years, female, asian, stage:Stage I, alive, 2324 days	184.7
TCGA-ES-A2HS-01A	80 years, male, white, stage:Stage I, dead, 688 days	184.2
TCGA-DD-A4NR-01A	85 years, female, white, stage:Stage I, dead, 9 days	183.3
TCGA-DD-AAVX-01A	38 years, male, asian, stage:Stage II, alive, 1718 days	183.0
TCGA-BC-A69H-01A	64 years, male, white, stage:Stage II, alive, 444 days	182.7
TCGA-LG-A9QC-01A	48 years, male, white, stage:Stage I, alive, 425 days	182.6
TCGA-ED-A66X-01A	35 years, male, asian, stage:Stage IIIA, alive, 406 days	181.8
TCGA-DD-AAVZ-01A	38 years, male, asian, stage:Stage I, alive, 1900 days	180.1
TCGA-G3-AAV3-01A	58 years, female, white, stage:Stage II, alive, 412 days	179.8
TCGA-DD-AAE1-01A	52 years, male, asian, stage:Stage I, alive, 552 days	179.4
TCGA-DD-AAEB-01A	60 years, male, asian, stage:Stage I, alive, 478 days	179.3
TCGA-2Y-A9GW-01A	64 years, male, white, stage:Stage I, dead, 1271 days	178.8
TCGA-DD-AAD1-01A	51 years, female, asian, stage:Stage I, alive, 564 days	178.7
TCGA-4R-AA8I-01A	66 years, male, white, stage:Stage II, dead, 262 days	178.5
TCGA-EP-A3JL-01A	76 years, male, white, stage:Stage I, alive, 303 days	178.1
TCGA-K7-A5RF-01A	64 years, male, white, stage:Stage I, alive, 631 days	177.9
TCGA-DD-AACK-01A	70 years, male, asian, stage:Stage I, alive, 9 days	177.3
TCGA-BC-A10S-01A	81 years, male, white, stage:'--, dead, 1423 days	176.8
TCGA-G3-AAUZ-01A	48 years, male, stage:Stage I, alive, 480 days	175.0
TCGA-G3-A7M8-01A	31 years, male, asian, stage:Stage I, alive, 430 days	175.0
TCGA-BD-A3EP-01A	75 years, female, black or african american, stage:Stage I, alive, 409 days	174.4
TCGA-ED-A4XI-01A	58 years, male, asian, stage:Stage II, alive, 819 days	174.2
TCGA-DD-AACC-01A	61 years, male, asian, stage:Stage I, dead, 1685 days	173.5
TCGA-ZS-A9CD-01A	73 years, male, white, stage:Stage II, dead, 1386 days	172.5
TCGA-DD-AAE6-01A	59 years, female, asian, stage:Stage I, alive, 141 days	171.9
TCGA-DD-A3A2-01A	76 years, female, white, stage:Stage I, dead, 2131 days	171.7
TCGA-MI-A75H-01A	77 years, male, white, stage:'--, alive, 747 days	171.6
TCGA-ED-A8O5-01A	59 years, female, asian, stage:Stage IIIA, alive, 406 days	171.1
TCGA-G3-A7M7-01A	65 years, male, white, stage:Stage I, alive, 361 days	170.0
TCGA-DD-AACS-01A	39 years, male, asian, stage:Stage I, alive, 1804 days	168.5
TCGA-G3-AAV4-01A	83 years, female, white, stage:Stage I, dead, 27 days	168.3
TCGA-DD-AAD2-01A	66 years, male, asian, stage:Stage I, alive, 658 days	167.3
TCGA-WQ-A9G7-01A	71 years, female, white, stage:'--, alive, 30 days	167.2
TCGA-FV-A4ZP-01A	78 years, male, white, stage:Stage IIIA, dead, 2486 days	166.8
TCGA-DD-A3A4-01A	37 years, male, white, stage:Stage IIIA, dead, 612 days	166.0
TCGA-DD-A73A-01A	71 years, male, white, stage:Stage I, alive, 728 days	164.7
TCGA-DD-AAW0-01A	54 years, male, asian, stage:Stage I, alive, 2015 days	164.4
TCGA-DD-AAD5-01A	54 years, male, asian, stage:Stage I, alive, 1345 days	164.0
TCGA-FV-A495-01A	51 years, female, white, stage:Stage II, alive, 1 days	163.9
TCGA-BC-A10X-01A	52 years, female, white, stage:Stage IIIA, dead, 770 days	163.3
TCGA-DD-AAE2-01A	51 years, male, asian, stage:Stage I, alive, 638 days	163.0
TCGA-G3-A25V-01A	68 years, male, white, stage:Stage I, alive, 860 days	162.7
TCGA-DD-A4ND-01A	56 years, female, white, stage:Stage I, alive, 2746 days	161.5
TCGA-DD-AADB-01A	51 years, male, asian, stage:Stage I, alive, 1242 days	161.2
TCGA-DD-AAE0-01A	45 years, female, asian, stage:Stage IIIA, alive, 555 days	160.1
TCGA-BC-A110-01A	51 years, female, black or african american, stage:'--, dead, 2116 days	159.3
TCGA-2Y-A9GV-01A	54 years, female, white, stage:Stage I, dead, 2532 days	158.6
TCGA-DD-A4NE-01A	75 years, female, white, stage:Stage IIIA, dead, 660 days	158.4
TCGA-BD-A3ER-01A	62 years, male, white, stage:Stage II, alive, 1115 days	158.3
TCGA-BC-A8YO-01A	66 years, female, white, stage:Stage IIIC, alive, 562 days	157.8
TCGA-MR-A8JO-01A	34 years, male, white, stage:Stage I, alive, 330 days	157.6
TCGA-G3-A25S-01A	64 years, male, white, stage:Stage I, dead, 416 days	156.8
TCGA-2Y-A9GT-01A	51 years, male, white, stage:Stage I, dead, 1624 days	156.1
TCGA-5C-A9VG-01A	58 years, male, white, stage:Stage II, alive, 328 days	156.0
TCGA-G3-A3CH-01A	53 years, male, asian, stage:Stage IIIA, alive, 780 days	155.8
TCGA-T1-A6J8-01A	68 years, male, white, stage:'--, alive, 23 days	155.5
TCGA-DD-AAE7-01A	72 years, male, asian, stage:Stage I, alive, 644 days	155.1
TCGA-G3-A7M9-01A	70 years, male, white, stage:Stage IIIB, dead, 56 days	153.1
TCGA-CC-5258-01A	48 years, male, asian, stage:Stage II, dead, 129 days	152.9
TCGA-DD-AAEH-01A	73 years, male, asian, stage:Stage I, alive, 784 days	152.9
TCGA-K7-A6G5-01A	66 years, male, white, stage:Stage I, alive, 512 days	152.0
TCGA-HP-A5N0-01A	90 years, female, stage:'--, dead, 752 days	151.9
TCGA-DD-A4NL-01A	46 years, male, white, stage:Stage I, alive, 1711 days	151.6
TCGA-CC-A8HT-01A	74 years, male, asian, stage:Stage IIIA, dead, 140 days	151.2
TCGA-RC-A6M5-01A	20 years, female, white, stage:Stage IVA, alive, 15 days	150.2
TCGA-ZP-A9CV-01A	59 years, male, white, stage:'--, dead, 1088 days	149.7
TCGA-G3-A3CI-01A	71 years, male, white, stage:Stage I, alive, 180 days	149.6
TCGA-MI-A75C-01A	64 years, male, white, stage:Stage I, alive, 291 days	147.6
TCGA-5R-AA1D-01A	17 years, female, white, stage:Stage IIIA, alive, 449 days	147.4
TCGA-2Y-A9H7-01A	81 years, female, white, stage:Stage I, alive, 1168 days	147.1
TCGA-CC-A5UC-01A	63 years, male, asian, stage:Stage IIIA, dead, 347 days	145.8
TCGA-MI-A75G-01A	63 years, male, white, stage:Stage II, alive, 698 days	145.8
TCGA-2Y-A9H4-01A	68 years, male, black or african american, stage:Stage I, alive, 1452 days	144.5
TCGA-5R-AAAM-01A	65 years, female, white, stage:Stage II, dead, 46 days	144.4
TCGA-BC-A10T-01A	76 years, male, white, stage:'--, dead, 837 days	143.8
TCGA-DD-A4NI-01A	67 years, male, white, stage:Stage II, alive, 816 days	142.9
TCGA-CC-A3MA-01A	61 years, male, asian, stage:Stage IIIA, dead, 303 days	141.6
TCGA-DD-AADK-01A	68 years, female, asian, stage:Stage II, alive, 1049 days	140.7
TCGA-EP-A12J-01A	62 years, male, black or african american, stage:Stage I, alive, 570 days	140.4
TCGA-DD-AAW3-01A	69 years, male, asian, stage:Stage I, alive, 1633 days	140.3
TCGA-DD-AAD6-01A	66 years, male, asian, stage:Stage IIIA, alive, 672 days	139.9
TCGA-CC-5259-01A	60 years, female, asian, stage:Stage IIIC, alive, 250 days	139.8
TCGA-BC-A112-01A	80 years, male, white, stage:'--, dead, 153 days	136.6
TCGA-RC-A7S9-01A	47 years, female, asian, stage:Stage I, alive, 640 days	136.3
TCGA-DD-A4NA-01A	67 years, female, white, stage:Stage IIIC, alive, 1008 days	134.0
TCGA-DD-AACI-01A	69 years, male, asian, stage:Stage II, alive, 1618 days	134.0
TCGA-WX-AA46-01A	61 years, male, white, stage:Stage II, alive, 756 days	133.6
TCGA-DD-AACZ-01A	63 years, female, asian, stage:Stage I, dead, 171 days	133.5
TCGA-DD-AAE4-01A	49 years, female, asian, stage:Stage I, alive, 608 days	133.4
TCGA-DD-A73D-01A	68 years, female, white, stage:Stage II, alive, 693 days	132.4
TCGA-ED-A7PZ-01A	61 years, male, asian, stage:Stage II, alive, 6 days	132.2
TCGA-EP-A26S-01A	70 years, male, white, stage:Stage I, alive, 608 days	131.3
TCGA-G3-A5SK-01A	58 years, male, white, stage:Stage I, alive, 744 days	131.1
TCGA-UB-AA0V-01A	69 years, female, white, stage:Stage I, alive, 314 days	130.8
TCGA-DD-AAVY-01A	56 years, male, asian, stage:Stage IIIA, alive, 1970 days	130.5
TCGA-O8-A75V-01A	54 years, male, stage:Stage I, alive, 538 days	130.2
TCGA-2Y-A9HB-01A	66 years, male, stage:Stage I, alive, 260 days	130.1
TCGA-DD-AACY-01A	61 years, male, asian, stage:Stage I, alive, 1450 days	130.0
TCGA-DD-AAD8-01A	73 years, female, asian, stage:Stage I, alive, 1219 days	129.3
TCGA-DD-A4NV-01A	61 years, male, white, stage:Stage IIIA, alive, 2398 days	129.2
TCGA-DD-AADL-01A	58 years, male, asian, stage:Stage I, alive, 636 days	129.1
TCGA-RC-A6M4-01A	74 years, female, white, stage:Stage IIIA, alive, 22 days	128.7
TCGA-DD-A11C-01A	69 years, male, white, stage:Stage I, alive, 662 days	128.6
TCGA-2Y-A9H6-01A	68 years, female, white, stage:Stage I, alive, 357 days	128.3
TCGA-UB-AA0U-01A	60 years, male, white, stage:Stage II, alive, 327 days	127.7
TCGA-DD-A3A3-01A	45 years, male, asian, stage:Stage I, dead, 535 days	127.4
TCGA-ED-A82E-01A	60 years, female, asian, stage:Stage IIIA, alive, 408 days	125.8
TCGA-DD-AAW2-01A	69 years, male, asian, stage:Stage I, alive, 1855 days	125.6
TCGA-DD-A4NK-01A	80 years, female, white, stage:Stage IIIA, dead, 1210 days	125.5
TCGA-ZS-A9CE-01A	79 years, female, white, stage:Stage II, alive, 1241 days	123.4
TCGA-G3-A3CJ-01A	52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	122.9
TCGA-DD-A4NQ-01A	60 years, male, white, stage:Stage II, dead, 373 days	122.5
TCGA-2Y-A9GZ-01A	82 years, female, white, stage:Stage II, dead, 848 days	121.2
TCGA-ED-A66Y-01A	51 years, female, asian, stage:Stage IIIA, dead, 296 days	120.9
TCGA-MR-A520-01A	58 years, male, white, stage:Stage I, alive, 229 days	119.7
TCGA-DD-A1EF-01A	57 years, female, white, stage:Stage I, dead, 394 days	119.5
TCGA-DD-A113-01A	55 years, female, white, stage:Stage II, alive, 2425 days	118.9
TCGA-DD-AADF-01A	64 years, female, asian, stage:Stage I, dead, 115 days	118.5
TCGA-G3-A5SL-01A	70 years, male, white, stage:Stage II, alive, 621 days	118.1
TCGA-DD-A1EC-01A	20 years, female, white, stage:Stage I, alive, 602 days	117.6
TCGA-RC-A7SH-01A	42 years, male, asian, stage:Stage II, alive, 468 days	117.2
TCGA-CC-A7IE-01A	57 years, male, asian, stage:Stage IIIA, dead, 217 days	116.6
TCGA-BC-A216-01A	62 years, female, white, stage:Stage IIIA, alive, 1351 days	116.3
TCGA-G3-A7M5-01A	76 years, male, asian, stage:Stage I, alive, 447 days	114.7
TCGA-CC-A5UD-01A	45 years, male, asian, stage:Stage IIIA, dead, 304 days	112.5
TCGA-G3-A25Z-01A	58 years, male, asian, stage:Stage I, alive, 655 days	112.1
TCGA-DD-A116-01A	68 years, male, asian, stage:Stage IIIA, dead, 1622 days	111.8
TCGA-ZP-A9D4-01A	64 years, female, white, stage:'--, alive, 395 days	111.7
TCGA-CC-A9FS-01A	55 years, male, asian, stage:Stage II, alive, 211 days	109.9
TCGA-DD-AACD-01A	48 years, male, asian, stage:Stage I, dead, 381 days	108.8
TCGA-MI-A75E-01A	61 years, male, white, stage:Stage IIIC, alive, 507 days	108.6
TCGA-2Y-A9H3-01A	45 years, male, white, stage:Stage II, alive, 1516 days	106.9
TCGA-DD-AAC9-01A	51 years, male, asian, stage:Stage I, alive, 347 days	105.5
TCGA-DD-AADG-01A	70 years, male, asian, stage:Stage IIIA, alive, 1145 days	105.3
TCGA-FV-A3I0-01A	76 years, female, white, stage:Stage II, alive, 848 days	104.9
TCGA-DD-A4NG-01A	77 years, male, white, stage:Stage IIIA, dead, 802 days	104.7
TCGA-DD-AADN-01A	59 years, male, asian, stage:Stage I, alive, 898 days	104.6
TCGA-G3-A5SJ-01A	59 years, male, white, stage:Stage I, alive, 698 days	102.6
TCGA-RC-A7SF-01A	66 years, male, asian, stage:Stage I, alive, 579 days	99.8
TCGA-ED-A8O6-01A	50 years, female, asian, stage:Stage IIIA, dead, 56 days	99.4
TCGA-2Y-A9H1-01A	58 years, male, white, stage:Stage I, dead, 1229 days	93.7
TCGA-BC-A3KF-01A	66 years, female, white, stage:Stage I, alive, 8 days	93.6
TCGA-2Y-A9GU-01A	55 years, female, white, stage:Stage I, alive, 1939 days	92.9
TCGA-DD-A39X-01A	78 years, female, white, stage:Stage I, dead, 1694 days	91.2
TCGA-DD-AADS-01A	63 years, male, asian, stage:Stage I, alive, 474 days	87.7
TCGA-G3-AAV0-01A	58 years, male, asian, stage:Stage I, alive, 476 days	86.9
TCGA-DD-AAEG-01A	59 years, female, asian, stage:Stage I, alive, 719 days	83.6
TCGA-LG-A9QD-01A	68 years, male, white, stage:Stage IIIA, alive, 366 days	82.4
TCGA-EP-A2KA-01A	52 years, female, white, stage:Stage IIIA, dead, 627 days	77.5
TCGA-DD-A3A7-01A	67 years, male, stage:Stage IIIB, dead, 419 days	76.9
TCGA-DD-AACT-01A	69 years, female, asian, stage:Stage I, alive, 1562 days	76.5
TCGA-DD-AADA-01A	66 years, female, asian, stage:Stage I, alive, 1233 days	76.2
TCGA-G3-A7M6-01A	60 years, female, white, stage:Stage I, alive, 632 days	76.2
TCGA-DD-AADU-01A	60 years, male, asian, stage:Stage II, alive, 554 days	71.7
TCGA-2Y-A9H2-01A	64 years, female, white, stage:Stage I, alive, 1731 days	68.8
TCGA-G3-A25U-01A	63 years, female, asian, stage:Stage I, alive, 1636 days	67.7
TCGA-CC-A8HV-01A	51 years, female, asian, stage:Stage II, dead, 279 days	58.2
TCGA-DD-AACE-01A	62 years, male, asian, stage:Stage I, alive, 2184 days	57.7
TCGA-DD-A39Z-01A	43 years, female, stage:Stage II, dead, 601 days	53.2
TCGA-FV-A496-01A	84 years, female, white, stage:Stage I, alive, 10 days	48.9
TCGA-DD-AADO-01A	55 years, male, asian, stage:Stage I, alive, 453 days	45.4
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
473	Tumor	1.3
131	Tumor	1.1
387	Tumor	1.0
536	Normal	1.0
863	Tumor	0.9
517	Tumor	0.9
958	Normal	0.8
742	Normal	0.8
937	Tumor	0.7
1032	Normal	0.7
963	Tumor	0.7
954	Normal	0.7
271	Tumor	0.7
351	Tumor	0.7
922	Normal	0.7
415	Tumor	0.7
715	Tumor	0.7
516	Normal	0.7
484	Normal	0.7
412	Normal	0.6
647	Tumor	0.6
332	Normal	0.6
526	Normal	0.6
352	Normal	0.6
716	Normal	0.6
546	Normal	0.6
944	Normal	0.6
478	Normal	0.6
362	Normal	0.6
224	Normal	0.6
368	Normal	0.6
554	Normal	0.5
874	Normal	0.5
112	Tumor	0.5
384	Normal	0.5
358	Normal	0.5
984	Normal	0.5
648	Normal	0.5
463	Tumor	0.5
538	Normal	0.5
965	Tumor	0.5
666	Normal	0.5
558	Normal	0.5
916	Normal	0.5
524	Normal	0.5
574	Normal	0.5
696	Normal	0.5
196	Normal	0.5
127	Tumor	0.5
534	Normal	0.4
344	Normal	0.4
864	Normal	0.4
451	Tumor	0.4
1042	Normal	0.4
471	Tumor	0.4
568	Normal	0.4
1031	Tumor	0.4
376	Normal	0.4
1041	Tumor	0.4
222	Normal	0.4
314	Normal	0.4
964	Normal	0.4
785	Tumor	0.4
777	Tumor	0.4
452	Normal	0.4
468	Normal	0.4
268	Normal	0.4
113	Tumor	0.4
926	Normal	0.4
564	Normal	0.4
422	Normal	0.4
921	Tumor	0.4
261	Tumor	0.4
982	Normal	0.4
567	Tumor	0.4
1046	Normal	0.3
363	Tumor	0.3
227	Tumor	0.3
444	Normal	0.3
514	Normal	0.3
278	Normal	0.3
881	Tumor	0.3
882	Normal	0.3
968	Normal	0.3
354	Normal	0.3
923	Tumor	0.3
868	Normal	0.3
824	Normal	0.3
978	Normal	0.3
528	Normal	0.3
366	Normal	0.3
192	Normal	0.3
938	Normal	0.3
852	Normal	0.3
867	Tumor	0.3
862	Normal	0.3
966	Normal	0.3
435	Tumor	0.3
365	Tumor	0.3
481	Tumor	0.3
394	Normal	0.3
146	Normal	0.3
557	Tumor	0.3
428	Normal	0.3
396	Normal	0.3
443	Tumor	0.3
137	Tumor	0.3
388	Normal	0.3
952	Normal	0.3
918	Normal	0.3
124	Normal	0.3
221	Tumor	0.3
917	Tumor	0.2
636	Normal	0.2
474	Normal	0.2
884	Normal	0.2
392	Normal	0.2
816	Normal	0.2
628	Normal	0.2
861	Tumor	0.2
488	Normal	0.2
416	Normal	0.2
228	Normal	0.2
518	Normal	0.2
214	Normal	0.2
142	Normal	0.2
714	Normal	0.2
218	Normal	0.2
778	Normal	0.2
912	Normal	0.2
1044	Normal	0.2
741	Tumor	0.2
132	Normal	0.2
421	Tumor	0.2
818	Normal	0.2
943	Tumor	0.2
312	Normal	0.2
563	Tumor	0.2
642	Normal	0.2
686	Normal	0.1
128	Normal	0.1
456	Normal	0.1
185	Tumor	0.1
878	Normal	0.1
723	Tumor	0.1
1028	Normal	0.1
1043	Tumor	0.1
424	Normal	0.1
976	Normal	0.1
272	Normal	0.1
258	Normal	0.1
553	Tumor	0.1
913	Tumor	0.1
114	Normal	0.1
977	Tumor	0.1
448	Normal	0.1
498	Normal	0.1
232	Normal	0.1
698	Normal	0.1
472	Normal	0.1
494	Normal	0.1
737	Tumor	0.1
746	Normal	0.1
138	Normal	0.1
386	Normal	0.1
187	Tumor	0.1
188	Normal	0.1
814	Normal	0.1
664	Normal	0.1
342	Normal	0.1
353	Tumor	0.1
483	Tumor	0.1
455	Tumor	0.1
983	Tumor	0.1
883	Tumor	0.1
525	Tumor	0.1
426	Normal	0.1
383	Tumor	0.0
361	Tumor	0.0
925	Tumor	0.0
111	Normal	0.0
186	Normal	0.0
467	Tumor	0.0
425	Tumor	0.0
195	Tumor	0.0
311	Tumor	0.0
572	Normal	0.0
721	Tumor	0.0
327	Tumor	0.0
873	Tumor	0.0
464	Normal	0.0
262	Normal	0.0
328	Normal	0.0
436	Normal	0.0
477	Tumor	0.0
914	Normal	0.0
953	Tumor	0.0
695	Tumor	0.0
267	Tumor	0.0
738	Normal	0.0
813	Tumor	0.0
212	Normal	0.0
744	Normal	0.0
641	Tumor	0.0
523	Tumor	-0.1
956	Normal	-0.1
148	Normal	-0.1
573	Tumor	-0.1
411	Tumor	-0.1
434	Normal	-0.1
367	Tumor	-0.1
445	Tumor	-0.1
722	Normal	-0.1
492	Normal	-0.1
217	Tumor	-0.1
283	Tumor	-0.1
911	Tumor	-0.1
414	Normal	-0.1
172	Normal	-0.1
662	Normal	-0.1
364	Normal	-0.1
482	Normal	-0.1
924	Normal	-0.1
1022	Normal	-0.1
545	Tumor	-0.1
284	Normal	-0.1
432	Normal	-0.1
1045	Tumor	-0.1
433	Tumor	-0.1
285	Tumor	-0.1
513	Tumor	-0.1
665	Tumor	-0.1
213	Tumor	-0.1
866	Normal	-0.1
423	Tumor	-0.1
385	Tumor	-0.1
527	Tumor	-0.1
355	Tumor	-0.2
823	Tumor	-0.2
487	Tumor	-0.2
728	Normal	-0.2
171	Tumor	-0.2
756	Normal	-0.2
298	Normal	-0.2
786	Normal	-0.2
395	Tumor	-0.2
1016	Normal	-0.2
393	Tumor	-0.2
724	Normal	-0.2
515	Tumor	-0.2
627	Tumor	-0.2
277	Tumor	-0.2
1014	Normal	-0.2
147	Tumor	-0.2
951	Tumor	-0.2
858	Normal	-0.2
533	Tumor	-0.2
466	Normal	-0.2
535	Tumor	-0.3
162	Normal	-0.3
817	Tumor	-0.3
1026	Normal	-0.3
617	Tumor	-0.3
223	Tumor	-0.3
851	Tumor	-0.3
431	Tumor	-0.3
713	Tumor	-0.3
191	Tumor	-0.3
618	Normal	-0.3
447	Tumor	-0.3
343	Tumor	-0.3
537	Tumor	-0.3
427	Tumor	-0.3
356	Normal	-0.3
145	Tumor	-0.3
685	Tumor	-0.3
975	Tumor	-0.4
446	Normal	-0.4
413	Tumor	-0.4
391	Tumor	-0.4
616	Normal	-0.4
462	Normal	-0.4
1021	Tumor	-0.4
286	Normal	-0.4
697	Tumor	-0.4
126	Normal	-0.4
915	Tumor	-0.4
877	Tumor	-0.4
231	Tumor	-0.4
957	Tumor	-0.4
141	Tumor	-0.5
357	Tumor	-0.5
461	Tumor	-0.5
727	Tumor	-0.5
257	Tumor	-0.5
981	Tumor	-0.5
161	Tumor	-0.5
375	Tumor	-0.5
745	Tumor	-0.5
341	Tumor	-0.5
857	Tumor	-0.6
123	Tumor	-0.6
331	Tumor	-0.6
465	Tumor	-0.6
125	Tumor	-0.6
493	Tumor	-0.6
313	Tumor	-0.6
297	Tumor	-0.7
955	Tumor	-0.7
491	Tumor	-0.7
1015	Tumor	-0.7
755	Tumor	-0.7
211	Tumor	-0.7
661	Tumor	-0.8
635	Tumor	-0.8
967	Tumor	-0.9
865	Tumor	-0.9
136	Normal	-0.9
743	Tumor	-0.9
615	Tumor	-1.0
135	Tumor	-1.0
815	Tumor	-1.0
672	Normal	-1.0
571	Tumor	-1.0
671	Tumor	-1.0
497	Tumor	-1.1
1025	Tumor	-1.2
1027	Tumor	-1.3
1013	Tumor	-1.5
663	Tumor	-1.7
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA035304	Antibody CAB000020
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS
Carcinoma, metastatic, NOS