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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
31.1
nTPM
GTEx:
5.5
nTPM
FANTOM5:
2.5
Scaled Tags Per Million
Pig:
2.2
nTPM
SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.1
Sample id
Sample description
nTPM
Substantia nigra nTPM: 31.1
1941
Male, age 53, unknown
129.7
2665
Male, age 74, both hemispheres
29.0
2590
Female, age 75, unknown
28.3
2699
Male, age 18, unknown
28.1
2583
Male, age 75, right hemisphere
24.3
1851
Male, age 51, unknown
20.3
2241
Male, age 72, unknown
17.3
1916
Female, age 42, unknown
13.1
2409
Female, age 72, unknown
12.8
1889
Female, age 72, unknown
8.2
SUBSTANTIA NIGRA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 5.5
Samples: 139
Max nTPM: 69.5
Min nTPM: 0.3
Std nTPM: 8.2
Median nTPM: 3.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
69.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
48.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
37.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
30.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
12.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
12.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
9.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
8.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
7.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
7.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
7.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
6.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
6.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
6.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
6.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
6.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
6.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
6.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
6.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
6.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
6.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
5.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
5.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
5.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
5.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
4.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
4.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
4.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
4.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
4.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
4.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
4.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
3.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
3.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
3.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
3.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
3.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
2.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
2.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
2.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
2.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
2.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
2.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
0.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
0.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.