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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
12.9
nTPM
GTEx:
6.0
nTPM
FANTOM5:
28.6
Scaled Tags Per Million
Pig:
6.7
nTPM
SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.9
Sample id
Sample description
nTPM
Substantia nigra nTPM: 12.9
2409
Female, age 72, unknown
23.4
2241
Male, age 72, unknown
13.4
1916
Female, age 42, unknown
13.3
2699
Male, age 18, unknown
13.0
1851
Male, age 51, unknown
11.9
1889
Female, age 72, unknown
11.0
2665
Male, age 74, both hemispheres
10.9
2590
Female, age 75, unknown
10.7
1941
Male, age 53, unknown
10.5
2583
Male, age 75, right hemisphere
10.5
SUBSTANTIA NIGRA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 6.0
Samples: 139
Max nTPM: 11.3
Min nTPM: 2.8
Std nTPM: 1.8
Median nTPM: 5.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
11.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
10.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
9.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
9.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
8.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
8.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
8.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
8.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
8.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
8.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
8.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
7.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
7.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
7.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
7.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
7.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
7.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
7.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
6.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
6.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
6.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
6.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
6.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
6.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
6.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
6.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
6.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
6.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
6.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
6.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
5.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
5.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
5.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
5.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
5.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
5.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
5.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
5.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
5.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
5.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
5.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
5.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
5.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
5.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
5.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
5.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
5.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
5.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
5.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
5.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
5.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
5.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
5.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
5.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
4.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
4.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
4.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
4.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
4.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
4.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
4.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
4.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
4.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
4.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
4.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
4.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
4.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
3.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
3.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
3.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
3.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
3.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.8
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SUBSTANTIA NIGRA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.