PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		49.129
Mouse brain, Intensity
Ponsi 		79.397
RNA expressioni
HPA Brain:186.1 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:19.8 nTPM
Allen mouse:9.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA051979
Medulla oblongata mean intensity 49.129
intensityi
FRONT BACK
Nucleus of the solitary tract 41.410
Raphe magnus nucleus 16.686
Cochlear nucleus 35.945
Lateral paragigantocellular nucleus 20.682
Raphe pallidus nucleus 29.657
Facial nucleus 44.979
Hypoglossal nucleus 47.086
Ambiguus nucleus 49.129
External cuneate nucleus 21.902
Inferior olivary nucleus 13.846
Raphe obscures nucleus 19.313
Dorsal motor nucleus of vagus 27.420
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 79.397
Parabrachial nucleus 13.868
Principle sensory trigeminal nucleus 34.920
Locus coeruleus 50.633
Pontine nucleus 23.650
Vestibular nucleus 21.549
Pontine reticular nucleus, oral 19.757
Lateral lemniscus 14.795
Superior paraolivary nucleus 20.849

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 186.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 85.4
1984 Male, age 76, both hemispheres 111.7
2090 Male, age 80, both hemispheres 91.0
2301 Female, age 85, both hemispheres 80.7
2188 Female, age 91, both hemispheres 58.2
Area postrema
nTPM: 110.9
2799 Male, age 61, both hemispheres 118.8
2306 Male, age 80, both hemispheres 107.5
2054 Male, age 76, both hemispheres 106.4
Dorsal cochlear nucleus
nTPM: 118.1
2058 Male, age 76, both hemispheres 142.8
2370 Male, age 61, both hemispheres 140.2
2378 Male, age 80, both hemispheres 112.9
2802 Male, age 74, right hemisphere 112.7
2187 Female, age 91, both hemispheres 81.7
Dorsal medullary reticular nucleus
nTPM: 119.7
2373 Male, age 61, both hemispheres 125.9
2040 Female, age 85, both hemispheres 121.4
2088 Male, age 76, both hemispheres 111.7
Dorsal motor vagal complex
nTPM: 118.8
2185 Male, age 76, both hemispheres 156.3
2797 Male, age 61, both hemispheres 148.0
2844 Male, age 55, unknown 132.5
2000 Male, age 74, unknown 128.0
2133 Female, age 91, both hemispheres 115.4
2643 Male, age 74, both hemispheres 114.9
2813 Female, age 72, unknown 93.1
2807 Female, age 85, both hemispheres 62.0
Dorsal tegmental nucleus
nTPM: 101.6
2083 Male, age 80, both hemispheres 114.7
1936 Male, age 76, left hemisphere 110.6
2326 Male, age 74, both hemispheres 93.3
2358 Male, age 61, both hemispheres 87.7
Dorsolateral tegmental area
nTPM: 92.6
2141 Male, age 76, both hemispheres 134.1
2654 Male, age 80, both hemispheres 108.6
2751 Female, age 85, both hemispheres 83.3
2360 Male, age 74, both hemispheres 76.6
2337 Male, age 61, both hemispheres 60.7
Gigantocellular reticular nuclei, medullary
nTPM: 116.7
2314 Male, age 61, both hemispheres 145.6
2462 Male, age 74, both hemispheres 141.3
2387 Female, age 91, both hemispheres 110.6
2022 Male, age 76, right hemisphere 110.2
2310 Male, age 80, both hemispheres 102.6
1876 Female, age 85, both hemispheres 89.8
Gigantocellular reticular nuclei, pars
nTPM: 127.5
2336 Male, age 61, both hemispheres 142.0
2084 Female, age 85, both hemispheres 127.8
2168 Male, age 76, both hemispheres 127.4
2330 Male, age 80, both hemispheres 127.0
2706 Male, age 80, both hemispheres 113.3
Inferior olive
nTPM: 186.1
2563 Male, age 74, both hemispheres 229.1
2085 Female, age 85, both hemispheres 205.7
2178 Male, age 61, both hemispheres 172.8
2379 Male, age 80, both hemispheres 166.2
2628 Female, age 91, both hemispheres 156.4
Kolliker-Fuse nucleus
nTPM: 97.7
2315 Male, age 76, right hemisphere 121.7
2163 Male, age 80, both hemispheres 110.6
2793 Female, age 91, left hemisphere 60.7
Lateral lemniscal nuclei
nTPM: 100.4
2453 Male, age 74, right hemisphere 122.0
2036 Male, age 80, both hemispheres 117.7
2169 Male, age 76, both hemispheres 108.6
2746 Female, age 85, left hemisphere 86.3
2320 Female, age 91, left hemisphere 67.4
Lateral medullary reticular nucleus
nTPM: 111.9
2804 Female, age 91, both hemispheres 148.0
2374 Male, age 61, both hemispheres 141.8
2044 Male, age 76, both hemispheres 105.7
2190 Female, age 85, both hemispheres 98.2
2852 Male, age 80, both hemispheres 94.9
2305 Male, age 74, both hemispheres 83.0
Lateral parabrachial nucleus
nTPM: 89.3
2139 Female, age 85, right hemisphere 131.5
2013 Male, age 80, both hemispheres 82.6
2790 Male, age 61, both hemispheres 79.1
2792 Male, age 76, both hemispheres 64.1
Lateral vestibular nucleus
nTPM: 125.3
2184 Male, age 76, both hemispheres 133.0
2311 Male, age 80, both hemispheres 117.6
Locus coeruleus
nTPM: 109.6
1980 Male, age 76, both hemispheres 135.5
2317 Female, age 72, unknown 123.8
2162 Male, age 80, both hemispheres 114.7
2123 Female, age 91, both hemispheres 112.2
2014 Male, age 55, unknown 112.0
2788 Male, age 74, unknown 87.0
2720 Male, age 74, both hemispheres 81.8
Medial olivary nucleus
nTPM: 105.7
2138 Female, age 91, both hemispheres 172.7
2851 Male, age 80, both hemispheres 112.2
1962 Male, age 76, both hemispheres 71.3
1943 Male, age 61, both hemispheres 66.7
Medial parabrachial nucleus
nTPM: 94.3
2156 Male, age 61, both hemispheres 114.3
2786 Male, age 76, both hemispheres 104.7
2854 Male, age 80, both hemispheres 89.1
2463 Female, age 85, right hemisphere 84.6
2170 Female, age 91, both hemispheres 78.6
Medial periolivary nuclei
nTPM: 106.8
2171 Female, age 85, both hemispheres 127.8
2063 Male, age 76, both hemispheres 126.4
2791 Male, age 74, right hemisphere 113.1
2458 Female, age 91, both hemispheres 86.9
2081 Male, age 80, both hemispheres 79.7
Medial vestibular nucleus
nTPM: 125.9
2624 Male, age 61, both hemispheres 170.4
2093 Male, age 80, both hemispheres 147.7
2134 Male, age 76, both hemispheres 126.1
2803 Female, age 91, both hemispheres 111.5
2801 Male, age 74, both hemispheres 106.9
2743 Female, age 85, both hemispheres 93.0
Motor facial nucleus
nTPM: 120.8
2795 Female, age 91, both hemispheres 167.1
2062 Male, age 76, both hemispheres 145.4
2126 Male, age 61, both hemispheres 125.8
2327 Male, age 80, both hemispheres 107.7
2365 Male, age 74, right hemisphere 106.4
2697 Female, age 85, both hemispheres 72.4
Motor hypoglossal nucleus
nTPM: 102.1
2125 Female, age 91, both hemispheres 130.9
2277 Male, age 76, both hemispheres 110.4
2461 Male, age 61, both hemispheres 102.3
2182 Male, age 80, both hemispheres 91.8
2132 Female, age 85, both hemispheres 74.9
Motor trigeminal nucleus
nTPM: 98.7
2335 Male, age 61, both hemispheres 130.9
2309 Male, age 76, both hemispheres 106.9
2079 Male, age 80, both hemispheres 90.6
2560 Male, age 74, both hemispheres 86.1
2321 Female, age 91, both hemispheres 79.2
Nuclei of the trapezoid body
nTPM: 125.4
2735 Female, age 85, both hemispheres 137.4
1983 Male, age 76, both hemispheres 132.3
2368 Female, age 91, both hemispheres 130.5
2159 Male, age 61, both hemispheres 128.2
2166 Male, age 80, both hemispheres 98.8
Nucleus ambiguus
nTPM: 121.4
2096 Female, age 85, both hemispheres 134.0
2071 Male, age 76, both hemispheres 108.8
Nucleus cuneatus
nTPM: 129.3
2562 Male, age 61, both hemispheres 158.8
2805 Female, age 91, both hemispheres 158.2
2564 Male, age 74, both hemispheres 154.5
2100 Male, age 76, both hemispheres 153.8
2131 Male, age 76, both hemispheres 152.3
2376 Male, age 61, both hemispheres 126.9
2808 Female, age 85, both hemispheres 95.1
2380 Male, age 80, both hemispheres 85.5
2381 Male, age 80, both hemispheres 78.9
Nucleus gracilis
nTPM: 95.6
2627 Male, age 74, both hemispheres 121.1
2299 Female, age 85, both hemispheres 103.9
2382 Male, age 80, both hemispheres 62.0
Nucleus raphe magnus
nTPM: 117.6
2455 Male, age 74, both hemispheres 136.4
2160 Male, age 61, both hemispheres 134.7
2051 Male, age 76, both hemispheres 119.4
2172 Female, age 85, both hemispheres 118.5
2328 Male, age 80, both hemispheres 109.0
2459 Female, age 91, both hemispheres 87.5
Nucleus raphe obscurus
nTPM: 90.4
2800 Male, age 61, midline 104.9
2142 Male, age 76, midline 90.1
2845 Female, age 85, midline 76.0
Nucleus raphe pallidus
nTPM: 85.7
2183 Male, age 80, midline 121.9
2145 Male, age 76, midline 79.3
1924 Male, age 61, midline 56.0
Nucleus tractus solitarii
nTPM: 96.6
2656 Male, age 76, both hemispheres 135.2
2307 Male, age 80, both hemispheres 90.1
2191 Female, age 85, both hemispheres 84.3
2144 Female, age 91, right hemisphere 76.9
Paramedian reticular nucleus
nTPM: 117.7
2313 Male, age 61, both hemispheres 168.3
2057 Male, age 80, both hemispheres 130.7
2050 Female, age 85, both hemispheres 104.5
2052 Male, age 76, both hemispheres 67.4
Parvicellular reticular nuclei
nTPM: 112.4
2119 Male, age 80, both hemispheres 124.2
2558 Male, age 74, both hemispheres 112.4
2095 Male, age 76, both hemispheres 100.7
Parvicellular reticular nuclei, medullary
nTPM: 127.0
2181 Male, age 80, left hemisphere 142.3
2091 Female, age 85, both hemispheres 122.9
2189 Female, age 91, both hemispheres 115.8
Pedunculopontine tegmental nucleus
nTPM: 91.7
1921 Female, age 85, both hemispheres 104.0
2334 Male, age 80, both hemispheres 97.9
2338 Male, age 61, both hemispheres 73.3
Peritrigeminal nucleus
nTPM: 116.0
2067 Female, age 85, both hemispheres 125.9
2179 Male, age 61, both hemispheres 115.6
2136 Male, age 76, both hemispheres 106.4
Pontine nuclei
nTPM: 91.1
2787 Female, age 85, both hemispheres 128.3
1968 Male, age 76, left hemisphere 114.5
1863 Male, age 55, unknown 103.3
2109 Female, age 72, unknown 96.7
2727 Male, age 61, right hemisphere 95.5
2115 Male, age 80, left hemisphere 81.4
2454 Male, age 74, left hemisphere 55.2
2319 Female, age 91, both hemispheres 54.0
Pontine raphe nucleus
nTPM: 116.0
2853 Male, age 76, midline 128.0
2122 Female, age 85, midline 104.0
Posteroventral cochlear nucleus
nTPM: 87.3
2371 Male, age 61, both hemispheres 114.6
2752 Female, age 85, both hemispheres 112.0
2070 Male, age 76, both hemispheres 104.5
2341 Male, age 80, both hemispheres 70.2
2135 Female, age 91, both hemispheres 35.3
Prepositus hypoglossal nucleus
nTPM: 123.9
2086 Male, age 80, both hemispheres 149.1
2855 Female, age 85, right hemisphere 98.6
Principal sensory trigeminal nucleus
nTPM: 105.7
2324 Male, age 76, both hemispheres 145.8
2158 Male, age 61, both hemispheres 132.9
2008 Male, age 80, left hemisphere 89.9
2367 Female, age 91, left hemisphere 54.3
Reticular pontine nucleus, caudal
nTPM: 94.1
2332 Male, age 80, right hemisphere 117.4
2092 Male, age 76, both hemispheres 114.9
2457 Female, age 91, both hemispheres 82.0
2559 Male, age 74, both hemispheres 61.9
Reticular pontine nucleus, oral
nTPM: 82.6
2167 Male, age 76, both hemispheres 106.1
1939 Male, age 80, both hemispheres 104.4
2012 Female, age 85, both hemispheres 89.2
2361 Male, age 74, both hemispheres 57.9
2366 Female, age 91, both hemispheres 55.2
Reticulotegmental nucleus
nTPM: 118.6
2333 Male, age 80, both hemispheres 136.3
2322 Female, age 91, both hemispheres 123.4
2325 Male, age 76, both hemispheres 117.6
2452 Male, age 74, both hemispheres 97.1
Spinal trigeminal nucleus, caudal
nTPM: 120.3
2447 Male, age 76, both hemispheres 150.4
2390 Female, age 91, both hemispheres 129.3
2312 Male, age 61, both hemispheres 124.2
2308 Male, age 80, both hemispheres 102.3
2642 Male, age 74, both hemispheres 95.2
Spinal trigeminal nucleus, interpolar
nTPM: 115.4
2625 Male, age 61, both hemispheres 154.6
2033 Male, age 80, both hemispheres 121.4
2389 Female, age 91, both hemispheres 109.8
2066 Male, age 76, right hemisphere 107.2
2386 Female, age 85, both hemispheres 84.2
Spinal trigeminal nucleus, oral
nTPM: 115.9
1978 Male, age 76, both hemispheres 128.4
2164 Male, age 80, both hemispheres 111.9
2737 Female, age 85, both hemispheres 107.4
Spinal vestibular nucleus
nTPM: 128.6
2796 Male, age 61, both hemispheres 167.8
2186 Female, age 91, both hemispheres 145.2
2780 Male, age 80, both hemispheres 128.2
2748 Male, age 76, both hemispheres 118.5
2806 Female, age 85, both hemispheres 106.2
2384 Male, age 74, both hemispheres 105.6
Subcoeruleus area
nTPM: 93.4
2323 Female, age 91, left hemisphere 114.9
2089 Male, age 76, left hemisphere 105.9
1958 Male, age 80, both hemispheres 89.1
2451 Male, age 74, both hemispheres 87.0
2369 Female, age 85, left hemisphere 69.9
Superior olive
nTPM: 95.6
2364 Male, age 74, right hemisphere 107.8
2329 Male, age 80, right hemisphere 103.2
2561 Female, age 91, both hemispheres 93.2
2020 Male, age 76, both hemispheres 90.9
1875 Female, age 85, both hemispheres 82.9
Superior vestibular nucleus
nTPM: 107.0
2061 Male, age 76, both hemispheres 122.5
2015 Male, age 80, both hemispheres 117.1
2383 Male, age 74, both hemispheres 81.3
Ventral medullary reticular nucleus
nTPM: 116.7
2372 Male, age 61, both hemispheres 132.8
2060 Male, age 76, both hemispheres 100.6
Ventral periolivary nuclei
nTPM: 109.3
2130 Female, age 85, both hemispheres 149.9
2165 Male, age 80, both hemispheres 129.7
2794 Female, age 91, left hemisphere 84.5
2023 Male, age 76, both hemispheres 72.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 119.1
2302 Female, age 91, both hemispheres 166.8
2180 Male, age 61, both hemispheres 144.8
1986 Male, age 76, both hemispheres 101.1
2741 Female, age 85, both hemispheres 100.6
2118 Male, age 80, both hemispheres 82.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 102.2
2449 Male, age 74, both hemispheres 113.3
2456 Female, age 91, both hemispheres 109.7
1959 Male, age 76, both hemispheres 107.2
2161 Male, age 80, both hemispheres 105.6
2840 Female, age 85, both hemispheres 94.4
2359 Male, age 61, both hemispheres 82.9

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 55.6
FF:10182-103D2 60 years, female 63.7
FF:10165-103B3 76 years, female 47.6
Medulla oblongata
Scaled Tags Per Million: 56.7
FF:10038-101F2 18-64 years, mixed 64.8
FF:10174-103C3 60 years, female 53.1
FF:10155-103A2 76 years, female 52.1
Pons
Scaled Tags Per Million: 53.0
FF:10033-101E6 18-54 years, mixed 53.0

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 32.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 17.9
Samples: 4

Max nTPM: 22.1
Min nTPM: 12.8
Sample A Female 16.1
Sample B Female 20.7
Sample C Male 22.1
Sample D Male 12.8
Pons
nTPM: 32.3
Samples: 4

Max nTPM: 44.8
Min nTPM: 25.2
Sample A Female 44.8
Sample B Female 25.7
Sample C Male 25.2
Sample D Male 33.3

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 19.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 19.8
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.5
Sample A Male 24.0
Sample B Male 17.5
Sample C Female 22.3
Sample D Female 15.5

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 9.2
70436749 Antisense, RP_050324_01_D05, Mouse strain C57BL/6J (56 days, male) 9.2
69080015 Antisense, RP_050324_01_D05, Mouse strain C57BL/6J (56 days, male) 5.3
Pons
Expression energy: 8.8
70436749 Antisense, RP_050324_01_D05, Mouse strain C57BL/6J (56 days, male) 8.8
69080015 Antisense, RP_050324_01_D05, Mouse strain C57BL/6J (56 days, male) 7.2

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