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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Low
Enterocytes: Low
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:93.9 nTPM
HPA:93.9 nTPM
GTEx:47.0 nTPM
FANTOM5:128.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027398Antibody HPA027492Antibody HPA028033Antibody CAB013690
Endocrine cells -Low--
Enterocytes -Low--
Enterocytes - Microvilli -High--
Glandular cells High-HighHigh
Goblet cells -Not detected--
Paneth cells -Not detected--









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.9
overview
Male, age 65
Small intestine sample 232
nTPM: 103.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 116.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 70
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 85.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 47.0
Samples: 187

Max nTPM: 190.5
Min nTPM: 0.8
Std nTPM: 47.4
Median nTPM: 33.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 190.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 183.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 167.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 164.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 159.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 154.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 151.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 148.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 139.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 139.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 132.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 128.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 127.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 127.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 125.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 124.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 122.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 119.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 119.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 118.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 118.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 118.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 116.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 113.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 112.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 111.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 110.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 110.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 110.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 110.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 107.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 103.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 100.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 99.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 98.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 97.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 96.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 88.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 88.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 87.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 84.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 84.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 81.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 81.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 80.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 79.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 77.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 77.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 76.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 75.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 73.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 69.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 69.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 68.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 68.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 67.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 65.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 64.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 64.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 64.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 63.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 63.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 60.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 59.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 58.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 57.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 57.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 56.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 56.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 56.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 53.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 52.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 52.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 50.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 48.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 48.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 46.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 45.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 43.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 41.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 40.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 40.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 38.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 37.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 37.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 37.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 37.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 36.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 36.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 36.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 36.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 34.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 34.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 33.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 33.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 29.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 29.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 27.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 26.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 24.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 24.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 22.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 22.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 21.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 20.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 19.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 17.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 17.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 16.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 15.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 15.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 14.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 13.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 13.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 12.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 12.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 12.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 11.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 11.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 11.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 10.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 10.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 10.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 10.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 9.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 9.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 8.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 8.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 7.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 6.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 6.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 6.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 5.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 5.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 5.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 5.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 5.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 5.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 5.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 5.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 4.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 4.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 4.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 4.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3.5
GTEX-1192X-2526-SM-59868 50-59 years, male 3.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 128.7
FF:10024-101D6 15,40,85 years, mixed 128.7

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