BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA Brain:44.4 nTPM
GTEx:37.0 nTPM
FANTOM5:33.9 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:43.8 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.1
2481 Female, age 94, left hemisphere 38.2
1857 Female, age 85, left hemisphere 35.3
2289 Male, age 61, right hemisphere 35.0
1854 Male, age 80, left hemisphere 34.6
2290 Female, age 72, unknown 32.2
2846 Female, age 79, unknown 31.3
2288 Male, age 75, left hemisphere 29.8
1781 Male, age 74, unknown 28.6
Globus pallidus, externus
nTPM: 43.2
1996 Male, age 80, right hemisphere 52.7
2646 Male, age 61, right hemisphere 51.6
2772 Female, age 79, unknown 38.1
2567 Female, age 72, unknown 37.5
2395 Male, age 75, both hemispheres 36.2
Globus pallidus, internus
nTPM: 44.4
2111 Female, age 85, right hemisphere 56.1
2778 Female, age 91, both hemispheres 48.0
2483 Female, age 94, right hemisphere 44.2
2037 Male, age 80, right hemisphere 41.8
2287 Male, age 75, right hemisphere 41.3
2566 Female, age 72, unknown 41.0
1818 Male, age 74, unknown 38.6
Nucleus accumbens
nTPM: 34.0
1806 Female, age 85, left hemisphere 37.9
2732 Male, age 80, right hemisphere 37.9
2698 Female, age 72, unknown 36.0
2286 Male, age 75, left hemisphere 35.6
2824 Male, age 61, right hemisphere 34.0
1783 Male, age 74, unknown 31.7
2391 Female, age 94, left hemisphere 31.4
1856 Female, age 91, right hemisphere 27.3
Nucleus basalis of Meynert
nTPM: 37.7
2569 Male, age 61, both hemispheres 51.1
2821 Male, age 75, both hemispheres 34.7
2393 Male, age 80, right hemisphere 33.3
2484 Female, age 94, left hemisphere 31.7
Nucleus of the diagonal band
nTPM: 31.0
1979 Male, age 74, unknown 37.0
1812 Female, age 91, both hemispheres 36.6
2775 Male, age 80, right hemisphere 27.9
2029 Male, age 61, right hemisphere 26.9
2195 Female, age 85, both hemispheres 26.8
Putamen
nTPM: 32.5
2647 Male, age 75, left hemisphere 36.1
2466 Female, age 79, unknown 35.3
1829 Male, age 74, unknown 33.5
2482 Female, age 94, left hemisphere 32.5
2489 Female, age 72, unknown 31.2
1937 Female, age 91, right hemisphere 30.1
1838 Male, age 80, right hemisphere 28.6
Septal nuclei
nTPM: 35.2
2394 Male, age 61, left hemisphere 64.0
2199 Male, age 80, right hemisphere 39.0
2059 Female, age 85, both hemispheres 35.9
2629 Female, age 94, right hemisphere 30.8
2009 Female, age 91, both hemispheres 28.1
1960 Male, age 74, unknown 27.5
2031 Female, age 72, unknown 21.3
Stria terminalis, bed nucleus
nTPM: 31.7
2201 Male, age 74, unknown 36.7
1974 Female, age 91, both hemispheres 29.8
2486 Female, age 94, both hemispheres 28.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 37.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.8
Samples: 300

Max nTPM: 103.5
Min nTPM: 9.4
Std nTPM: 9.6
Median nTPM: 31.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 103.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 66.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 58.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 58.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 58.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 57.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 57.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 55.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 55.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 52.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 52.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.7
Samples: 285

Max nTPM: 238.4
Min nTPM: 14.6
Std nTPM: 17.4
Median nTPM: 29.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 238.4
GTEX-1N2EF-0011-R6a-SM-F33ZJ 60-69 years, male 124.2
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 91.2
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 85.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 69.9
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 67.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 65.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 62.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 61.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 61.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 60.0
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Brain - Putamen (basal ganglia)
Average nTPM: 37.0
Samples: 254

Max nTPM: 73.7
Min nTPM: 18.0
Std nTPM: 9.8
Median nTPM: 36.1
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 73.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 66.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 66.0
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 65.8
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 60.0
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 59.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 59.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 59.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 57.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 57.9
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 57.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.9
FF:10164-103B2 76 years, female 27.9
Nucleus accumbens
Scaled Tags Per Million: 18.5
FF:10037-101F1 23-56 years, mixed 18.5
Putamen
Scaled Tags Per Million: 19.0
FF:10176-103C5 60 years, female 19.0
Globus pallidus
Scaled Tags Per Million: 33.9
FF:10161-103A8 76 years, female 34.9
FF:10175-103C4 60 years, female 32.9

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 36.8
Pig sample Sample description nTPM
Caudate
nTPM: 28.1
Samples: 4

Max nTPM: 32.7
Min nTPM: 24.4
Sample A Female 24.7
Sample B Female 30.7
Sample C Male 32.7
Sample D Male 24.4
Putamen
nTPM: 30.9
Samples: 4

Max nTPM: 35.7
Min nTPM: 25.3
Sample A Female 30.3
Sample B Female 25.3
Sample C Male 35.7
Sample D Male 32.4
Septum
nTPM: 36.8
Samples: 4

Max nTPM: 54.4
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 29.8
Sample C Male 54.4
Sample D Male 35.0
Ventral pallidum
nTPM: 32.1
Samples: 4

Max nTPM: 46.9
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 30.4
Sample C Male 46.9
Sample D Male 28.3

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 43.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.3
Samples: 4

Max nTPM: 49.5
Min nTPM: 36.9
Sample A Male 43.9
Sample B Male 49.5
Sample C Female 36.9
Sample D Female 42.8
Septum
nTPM: 40.3
Samples: 4

Max nTPM: 45.2
Min nTPM: 32.5
Sample A Male 45.2
Sample B Male 32.5
Sample C Female 42.9
Sample D Female 40.7
Ventral forebrain
nTPM: 43.8
Samples: 4

Max nTPM: 50.3
Min nTPM: 38.5
Sample A Male 41.0
Sample B Male 45.5
Sample C Female 50.3
Sample D Female 38.5

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
77454675 Antisense, RP_070129_01_C07, Mouse strain C57BL/6J (56 days, male) 1.5
2587 Antisense, RP_040507_01_F10, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.8
77454675 Antisense, RP_070129_01_C07, Mouse strain C57BL/6J (56 days, male) 2.1
2587 Antisense, RP_040507_01_F10, Mouse strain C57BL/6J (56 days, male) 1.5

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