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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:65.0 nTPM
GTEx:65.0 nTPM
FANTOM5:47.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011041Antibody HPA019758Antibody CAB000021Antibody CAB000022
Squamous epithelial cells Not detectedNot detectedMediumMedium






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 65.0
Samples: 156

Max nTPM: 391.9
Min nTPM: 0.0
Std nTPM: 78.6
Median nTPM: 35.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 391.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 330.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 326.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 321.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 303.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 255.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 246.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 214.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 199.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 197.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 196.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 192.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 185.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 183.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 183.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 177.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 170.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 169.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 168.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 164.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 150.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 144.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 136.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 135.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 134.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 133.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 130.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 125.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 123.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 121.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 120.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 120.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 111.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 107.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 105.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 103.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 103.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 101.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 101.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 98.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 97.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 96.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 94.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 94.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 94.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 93.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 88.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 86.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 84.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 79.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 79.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 78.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 73.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 72.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 69.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 67.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 66.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 66.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 62.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 62.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 59.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 58.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 57.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 56.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 56.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 56.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 56.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 55.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 55.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 51.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 49.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 43.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 42.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 42.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 41.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 39.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 38.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 36.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 34.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 33.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 33.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 33.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 31.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 30.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 30.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 28.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 28.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 27.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 27.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 25.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 23.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 19.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 19.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 18.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 16.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 15.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 13.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 12.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 10.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 10.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 10.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 10.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 9.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 9.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 9.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 7.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 7.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 7.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 6.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 6.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 6.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 5.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 4.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 3.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 0.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 0.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 0.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 0.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 0.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 0.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 0.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 0.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 47.9
FF:10204-103F6 68 years, female 47.9

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