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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:203.4 nTPM
HPA Brain:153.0 nTPM
GTEx:203.4 nTPM
FANTOM5:109.8 Scaled Tags Per Million
Pig:284.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 149.2
1981 Female, age 72, midline 163.1
2194 Female, age 79, both hemispheres 155.8
2816 Male, age 47, midline 147.5
2565 Male, age 75, midline 144.1
2048 Male, age 55, midline 135.7
Cervical spinal cord, dorsal horn
nTPM: 149.6
2296 Male, age 66, both hemispheres 204.5
2173 Female, age 72, unknown 196.2
2069 Male, age 47, both hemispheres 142.8
1877 Male, age 55, unknown 136.6
2297 Male, age 75, both hemispheres 110.0
2721 Male, age 90, both hemispheres 107.8
Cervical spinal cord, ventral horn
nTPM: 153.0
2068 Male, age 55, unknown 162.3
2098 Female, age 72, unknown 159.0
2820 Female, age 79, both hemispheres 153.5
2295 Male, age 66, both hemispheres 148.9
2809 Male, age 90, both hemispheres 148.8
2480 Male, age 75, both hemispheres 145.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 203.4
Samples: 204

Max nTPM: 346.9
Min nTPM: 82.2
Std nTPM: 51.4
Median nTPM: 206.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 346.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 327.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 327.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 326.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 324.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 303.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 298.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 295.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 292.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 291.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 291.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 290.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 287.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 282.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 282.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 280.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 279.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 274.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 272.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 269.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 268.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 267.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 266.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 264.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 260.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 258.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 255.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 255.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 254.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 253.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 249.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 249.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 247.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 247.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 247.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 246.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 246.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 245.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 245.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 244.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 242.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 242.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 241.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 241.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 240.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 240.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 239.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 238.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 236.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 235.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 235.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 234.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 234.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 234.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 233.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 232.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 232.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 230.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 230.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 230.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 230.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 229.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 229.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 229.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 227.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 227.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 226.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 225.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 224.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 223.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 223.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 222.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 221.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 221.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 220.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 220.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 219.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 218.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 218.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 218.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 217.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 217.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 215.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 215.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 215.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 214.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 213.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 212.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 212.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 211.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 210.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 209.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 209.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 208.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 208.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 207.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 207.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 207.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 206.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 206.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 205.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 204.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 204.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 204.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 203.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 202.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 202.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 201.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 199.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 199.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 198.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 197.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 196.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 196.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 195.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 195.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 194.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 193.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 193.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 193.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 193.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 192.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 192.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 191.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 191.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 190.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 190.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 190.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 187.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 186.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 185.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 184.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 183.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 181.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 181.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 180.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 180.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 178.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 177.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 175.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 175.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 174.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 173.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 173.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 171.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 170.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 170.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 170.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 168.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 166.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 166.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 166.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 165.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 164.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 163.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 163.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 161.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 159.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 159.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 158.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 158.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 155.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 153.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 151.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 150.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 148.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 148.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 147.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 147.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 147.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 145.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 144.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 144.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 141.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 141.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 137.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 134.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 134.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 134.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 133.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 128.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 125.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 123.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 121.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 118.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 116.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 113.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 113.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 111.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 110.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 107.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 107.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 106.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 104.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 89.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 88.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 109.8
FF:10181-103D1 60 years, female 156.6
FF:10159-103A6 76 years, female 63.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 277.1
Samples: 4

Max nTPM: 304.8
Min nTPM: 229.5
Sample A Female 229.5
Sample B Female 300.4
Sample C Male 304.8
Sample D Male 273.7
Ventral spinal cord
nTPM: 284.8
Samples: 4

Max nTPM: 335.3
Min nTPM: 266.2
Sample A Female 268.4
Sample B Female 266.2
Sample C Male 269.1
Sample D Male 335.3

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