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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:12.5 nTPM
HPA:7.4 nTPM
GTEx:12.5 nTPM
FANTOM5:19.2 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041137
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.4
overview
Male, age 65
Small intestine sample 232
nTPM: 8.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 7.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 6.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 12.5
Samples: 187

Max nTPM: 21.6
Min nTPM: 6.5
Std nTPM: 2.4
Median nTPM: 12.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 21.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 19.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 19.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 18.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 18.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 17.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 17.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 17.3
GTEX-1192X-2526-SM-59868 50-59 years, male 17.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 17.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 16.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 16.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 16.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 16.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 16.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 16.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 16.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 16.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 15.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 15.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 15.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 15.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 15.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 15.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 14.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 14.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 14.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 14.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 14.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 14.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 14.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 14.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 14.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 14.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 14.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 14.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 14.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 14.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 14.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 14.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 14.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 14.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 13.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 13.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 13.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 13.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 13.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 13.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 13.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 13.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 13.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 13.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 13.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 13.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 13.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 13.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 13.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 13.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 13.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 13.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 13.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 13.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 13.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 13.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 13.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 13.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 13.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 13.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 13.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 13.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 12.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 12.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 12.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 12.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 12.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 12.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 12.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 12.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 12.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 12.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 12.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 12.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 12.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 12.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 12.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 12.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 12.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 12.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 12.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 12.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 12.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 12.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 12.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 12.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 12.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 12.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 12.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 12.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 11.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 11.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 11.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 11.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 11.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 11.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 11.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 11.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 11.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 11.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 11.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 11.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 11.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 11.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 11.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 11.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 11.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 11.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 11.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 11.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 11.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 11.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 11.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 11.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 11.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 11.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 11.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 11.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 11.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 11.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 11.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 10.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 10.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 10.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 10.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 10.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 10.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 10.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 10.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 10.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 10.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 10.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 10.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 10.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 10.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 10.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 10.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 10.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 10.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 10.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 10.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 10.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 10.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 10.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 10.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 9.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 9.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 9.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 9.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 9.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 9.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 9.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 9.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 9.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 9.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 9.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 9.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 9.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 9.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 8.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 8.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 8.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 8.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 8.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 8.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 8.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 7.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 7.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 6.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 19.2
FF:10024-101D6 15,40,85 years, mixed 19.2

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