HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:50.5 nTPM
HPA Brain:62.2 nTPM
GTEx:50.5 nTPM
FANTOM5:89.4 Scaled Tags Per Million
Pig:73.3 nTPM
Mouse:31.3 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody CAB003691Antibody CAB021888
Glial cells Not detectedHigh
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 62.2
Sample id Sample description nTPM
Hippocampus
nTPM: 54.7
2529 Female, age 94, left hemisphere 65.3
2621 Female, age 67, right hemisphere 57.8
1898 Male, age 80, left hemisphere 57.6
1911 Female, age 85, right hemisphere 56.9
2148 Female, age 91, left hemisphere 47.6
1855 Male, age 76, left hemisphere 42.8
Dentate gyrus
nTPM: 53.0
2530 Female, age 94, left hemisphere 70.3
2010 Male, age 76, both hemispheres 59.2
2528 Male, age 74, both hemispheres 52.4
1927 Female, age 91, both hemispheres 46.4
2246 Female, age 85, both hemispheres 46.1
2531 Female, age 67, both hemispheres 43.5
Entorhinal gyrus
nTPM: 57.7
2117 Female, age 91, right hemisphere 76.2
2764 Male, age 80, right hemisphere 59.6
1787 Male, age 76, left hemisphere 59.3
1938 Female, age 85, left hemisphere 55.3
2686 Male, age 75, right hemisphere 48.5
2613 Female, age 94, left hemisphere 47.2
Hippocampus, CA1
nTPM: 47.5
2527 Male, age 74, both hemispheres 55.2
1873 Female, age 85, both hemispheres 51.8
2082 Female, age 91, right hemisphere 50.0
2749 Male, age 80, left hemisphere 47.8
2045 Male, age 76, both hemispheres 32.9
Hippocampus, CA2
nTPM: 54.9
1963 Male, age 80, left hemisphere 60.5
2249 Male, age 74, both hemispheres 58.2
2437 Female, age 94, left hemisphere 56.5
2113 Female, age 91, right hemisphere 54.2
1940 Female, age 85, left hemisphere 50.9
1892 Male, age 76, both hemispheres 49.2
Hippocampus, CA3
nTPM: 47.6
1891 Female, age 85, both hemispheres 64.2
2436 Male, age 74, both hemispheres 49.0
1867 Male, age 76, both hemispheres 48.9
2620 Female, age 94, left hemisphere 45.0
2861 Female, age 67, both hemispheres 42.1
2137 Male, age 80, left hemisphere 36.4
Parahippocampal cortex
nTPM: 53.4
1990 Female, age 91, right hemisphere 63.9
2532 Female, age 72, left hemisphere 58.2
2245 Female, age 91, both hemispheres 56.9
1850 Male, age 80, both hemispheres 56.0
2018 Male, age 76, both hemispheres 55.1
1933 Female, age 85, both hemispheres 53.9
2692 Male, age 74, both hemispheres 53.8
2250 Female, age 67, right hemisphere 52.4
2693 Female, age 94, both hemispheres 43.1
2622 Female, age 67, right hemisphere 40.8
Perirhinal gyrus
nTPM: 51.8
1794 Male, age 80, right hemisphere 55.4
1841 Female, age 85, right hemisphere 53.2
2848 Male, age 76, right hemisphere 51.7
2521 Female, age 94, right hemisphere 49.7
1847 Female, age 91, left hemisphere 48.8
Subiculum
nTPM: 62.2
2042 Male, age 76, both hemispheres 69.5
2438 Female, age 94, left hemisphere 69.0
1977 Female, age 85, both hemispheres 64.5
1901 Male, age 80, both hemispheres 63.7
2619 Male, age 74, both hemispheres 58.8
2729 Female, age 91, right hemisphere 47.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 50.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.5
Samples: 255

Max nTPM: 103.8
Min nTPM: 27.0
Std nTPM: 15.0
Median nTPM: 46.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 103.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 102.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 101.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 93.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 92.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 89.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 87.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 86.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 84.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 84.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 83.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 89.4
FF:10153-102I9 76 years, female 115.4
FF:10169-103B7 60 years, female 63.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 73.3
Pig sample Sample description nTPM
Subiculum
nTPM: 67.7
Samples: 4

Max nTPM: 88.0
Min nTPM: 58.2
Sample A Female 88.0
Sample B Female 64.0
Sample C Male 60.7
Sample D Male 58.2
Dorsal hippocampus
nTPM: 72.7
Samples: 4

Max nTPM: 89.0
Min nTPM: 60.8
Sample A Female 89.0
Sample B Female 65.5
Sample C Male 75.6
Sample D Male 60.8
Entorhinal cortex
nTPM: 73.4
Samples: 4

Max nTPM: 81.7
Min nTPM: 64.7
Sample A Female 76.7
Sample B Female 81.7
Sample C Male 70.3
Sample D Male 64.7
Ventral hippocampus
nTPM: 61.7
Samples: 4

Max nTPM: 70.0
Min nTPM: 54.4
Sample A Female 61.0
Sample B Female 54.4
Sample C Male 70.0
Sample D Male 61.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 31.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 22.2
Sample A Male 30.5
Sample B Male 32.1
Sample C Female 27.4
Sample D Female 22.2
Hippocampal formation
nTPM: 31.3
Samples: 4

Max nTPM: 31.6
Min nTPM: 30.9
Sample A Male 31.2
Sample B Male 31.5
Sample C Female 30.9
Sample D Female 31.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
76097716 Antisense, RP_060626_01_C12, Mouse strain C57BL/6J (56 days, male) 1.5
112204566 Antisense, RP_110421_01_C08, Mouse strain C57BL/6J (56 days, male) 1.1

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