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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:37.2 nTPM
HPA Brain:108.1 nTPM
GTEx:37.2 nTPM
FANTOM5:129.4 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:33.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.1
Sample id Sample description nTPM
Amygdala
nTPM: 47.9
1987 Female, age 91, left hemisphere 73.4
2517 Female, age 94, left hemisphere 67.6
2514 Male, age 75, right hemisphere 53.1
2814 Male, age 76, right hemisphere 27.3
2695 Female, age 67, right hemisphere 18.1
Basal amygdala
nTPM: 93.8
2243 Female, age 91, right hemisphere 150.5
2685 Female, age 94, left hemisphere 112.6
2827 Female, age 67, right hemisphere 102.9
2110 Male, age 80, left hemisphere 73.7
2609 Male, age 75, right hemisphere 63.4
1955 Male, age 76, both hemispheres 59.7
Central amygdala
nTPM: 59.7
2239 Male, age 80, left hemisphere 84.6
2701 Female, age 91, right hemisphere 70.8
2826 Female, age 94, left hemisphere 67.9
2515 Male, age 75, right hemisphere 43.1
1905 Male, age 76, both hemispheres 32.2
Corticomedial amygdala
nTPM: 108.1
2242 Female, age 91, right hemisphere 162.9
2535 Female, age 67, right hemisphere 146.4
2829 Male, age 80, left hemisphere 112.3
2429 Female, age 94, left hemisphere 106.8
2428 Male, age 75, right hemisphere 66.3
2240 Male, age 76, both hemispheres 54.1
Lateral amygdala
nTPM: 58.6
2534 Female, age 94, left hemisphere 82.2
2255 Female, age 91, right hemisphere 77.7
2256 Male, age 80, left hemisphere 66.3
1883 Male, age 76, both hemispheres 52.8
2830 Female, age 67, right hemisphere 45.6
2516 Male, age 75, right hemisphere 27.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.2
Samples: 181

Max nTPM: 83.4
Min nTPM: 3.3
Std nTPM: 14.6
Median nTPM: 35.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 83.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 75.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 75.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 65.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 60.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 59.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 58.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 57.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 56.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 55.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 55.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 54.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 54.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 52.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 52.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 52.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 51.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 51.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 51.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 51.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 51.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 51.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 51.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 50.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 50.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 49.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 49.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 49.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 49.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 49.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 49.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 48.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 48.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 48.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 48.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 46.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 46.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 45.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 45.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 45.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 45.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 45.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 45.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 44.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 44.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 43.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 43.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 43.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 43.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 42.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 42.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 42.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 41.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 41.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 40.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 40.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 40.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 39.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 39.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 39.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 39.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 39.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 38.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 38.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 38.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 37.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 36.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 36.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 36.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 35.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 35.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 35.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 35.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 35.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 34.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 34.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 34.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 34.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 34.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 34.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 34.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 33.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 33.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 33.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 32.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 32.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 32.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 32.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 32.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 32.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 32.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 32.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 31.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 31.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 31.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 31.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 31.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 31.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 31.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 31.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 31.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 31.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 30.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 30.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 30.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 30.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 30.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 30.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 29.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 29.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 29.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 29.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 29.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 28.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 28.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 27.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 27.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 26.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 26.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 26.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 26.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 25.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 25.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 25.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 24.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 23.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 23.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 23.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 23.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 22.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 22.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 21.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 21.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 20.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 20.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 19.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 19.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 18.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 18.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 18.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 17.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 17.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 16.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 15.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 14.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 14.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 12.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 12.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 11.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 10.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 6.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 3.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 129.4
FF:10151-102I7 76 years, female 129.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
Pig sample Sample description nTPM
Amygdala
nTPM: 45.8
Samples: 4

Max nTPM: 61.3
Min nTPM: 30.8
Sample A Female 61.3
Sample B Female 30.8
Sample C Male 48.2
Sample D Male 42.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.5
Samples: 4

Max nTPM: 37.2
Min nTPM: 31.6
Sample A Male 37.2
Sample B Male 31.6
Sample C Female 31.6
Sample D Female 33.5

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