MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:98.3 nTPM
GTEx:45.2 nTPM
FANTOM5:150.5 Scaled Tags Per Million
Pig:60.9 nTPM
Mouse:61.5 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.9
2828 Female, age 72, unknown 118.3
1870 Female, age 42, unknown 96.4
2586 Male, age 75, left hemisphere 92.8
2411 Female, age 72, unknown 88.8
1833 Male, age 53, unknown 87.6
1827 Male, age 72, unknown 82.7
1830 Male, age 51, unknown 80.7
2666 Male, age 74, left hemisphere 78.4
2219 Male, age 76, both hemispheres 76.9
2019 Male, age 18, unknown 76.6
Dorsal raphe nucleus
nTPM: 98.3
2016 Female, age 72, unknown 111.6
2750 Male, age 76, both hemispheres 98.4
1828 Male, age 53, unknown 97.7
2298 Female, age 72, unknown 95.2
2047 Male, age 72, unknown 88.8
Inferior colliculus
nTPM: 91.8
1848 Female, age 42, unknown 98.8
2097 Female, age 72, unknown 93.4
2849 Male, age 72, unknown 89.1
1890 Male, age 53, unknown 85.7
Median raphe nucleus
nTPM: 86.3
2220 Male, age 76, midline 86.3
Periaquaductal grey, anterior
nTPM: 86.3
2502 Female, age 75, unknown 92.4
1795 Male, age 51, unknown 84.0
1947 Male, age 18, unknown 82.5
Periaquaductal grey, dorsal
nTPM: 91.7
1840 Male, age 53, unknown 96.5
2850 Male, age 76, both hemispheres 94.9
2464 Female, age 72, unknown 94.2
1831 Male, age 72, unknown 81.2
Periaquaductal grey, lateral
nTPM: 89.0
2053 Male, age 18, unknown 104.3
2140 Male, age 76, both hemispheres 97.1
2272 Male, age 74, both hemispheres 65.5
Pretectal area
nTPM: 93.8
2667 Female, age 75, unknown 114.9
2316 Male, age 76, right hemisphere 106.6
2224 Female, age 72, unknown 101.1
1815 Male, age 53, unknown 97.6
1944 Female, age 72, unknown 97.0
1817 Female, age 42, unknown 95.7
1816 Male, age 51, unknown 89.6
2273 Male, age 74, both hemispheres 89.5
2825 Male, age 18, unknown 82.3
2007 Male, age 72, unknown 80.3
2407 Male, age 75, both hemispheres 77.6
Red nucleus
nTPM: 94.7
2503 Female, age 72, unknown 112.2
2227 Male, age 72, unknown 108.0
2769 Male, age 72, unknown 107.7
1904 Male, age 53, unknown 104.7
1821 Female, age 72, unknown 104.6
1865 Male, age 51, unknown 102.4
1954 Female, age 42, unknown 101.6
2823 Male, age 76, right hemisphere 98.7
2785 Male, age 18, unknown 80.7
2725 Female, age 75, unknown 77.2
2588 Male, age 74, left hemisphere 71.5
2584 Male, age 75, left hemisphere 66.7
Substantia nigra
nTPM: 90.7
2699 Male, age 18, unknown 117.9
1851 Male, age 51, unknown 107.0
1916 Female, age 42, unknown 102.0
1889 Female, age 72, unknown 97.7
2241 Male, age 72, unknown 89.3
2409 Female, age 72, unknown 85.9
2590 Female, age 75, unknown 81.7
2665 Male, age 74, both hemispheres 81.5
1941 Male, age 53, unknown 75.2
2583 Male, age 75, right hemisphere 68.3
Superior colliculus
nTPM: 95.6
1995 Male, age 72, unknown 111.9
1913 Female, age 42, unknown 103.3
2087 Female, age 72, unknown 98.0
2668 Female, age 75, unknown 95.5
2261 Male, age 18, unknown 94.2
1839 Male, age 51, unknown 94.0
2587 Male, age 74, left hemisphere 93.6
2664 Male, age 75, both hemispheres 90.8
1796 Male, age 53, unknown 90.2
1895 Male, age 76, right hemisphere 83.9
Ventral tegmental area
nTPM: 94.3
2410 Female, age 72, unknown 103.7
2021 Male, age 53, unknown 102.0
1915 Female, age 42, unknown 93.2
2223 Female, age 72, unknown 93.0
2218 Male, age 76, both hemispheres 90.4
1942 Male, age 51, unknown 83.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.2
Samples: 183

Max nTPM: 132.7
Min nTPM: 8.0
Std nTPM: 20.6
Median nTPM: 40.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 132.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 115.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 113.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 108.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 96.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 94.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 86.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 82.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 80.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 79.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 150.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.5
FF:10158-103A5 76 years, female 150.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.5
Samples: 4

Max nTPM: 65.0
Min nTPM: 54.3
Sample A Female 59.2
Sample B Female 65.0
Sample C Male 54.3
Sample D Male 63.4
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 71.0
Min nTPM: 46.9
Sample A Female 71.0
Sample B Female 67.9
Sample C Male 57.8
Sample D Male 46.9
Periaqueductal gray
nTPM: 56.5
Samples: 3

Max nTPM: 66.1
Min nTPM: 51.6
Sample B Female 66.1
Sample C Male 51.6
Sample D Male 51.9
Superior colliculi
nTPM: 55.2
Samples: 4

Max nTPM: 59.2
Min nTPM: 52.2
Sample A Female 59.2
Sample B Female 53.1
Sample C Male 56.2
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 64.5
Min nTPM: 59.5
Sample A Male 61.6
Sample B Male 59.5
Sample C Female 64.5
Sample D Female 60.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68445059 Antisense, RP_050111_02_F08, Mouse strain C57BL/6J (56 days, male) 0.7

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