BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:66.1 nTPM
GTEx:29.4 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:43.5 nTPM
Mouse:185.2 nTPM
Allen mouse:21.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 66.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 62.1
2481 Female, age 94, left hemisphere 70.3
2288 Male, age 75, left hemisphere 69.9
2289 Male, age 61, right hemisphere 62.9
2846 Female, age 79, unknown 62.3
1854 Male, age 80, left hemisphere 59.5
1781 Male, age 74, unknown 59.1
2290 Female, age 72, unknown 56.4
1857 Female, age 85, left hemisphere 56.1
Globus pallidus, externus
nTPM: 57.3
2395 Male, age 75, both hemispheres 61.7
2567 Female, age 72, unknown 60.9
2646 Male, age 61, right hemisphere 59.4
2772 Female, age 79, unknown 52.2
1996 Male, age 80, right hemisphere 52.1
Globus pallidus, internus
nTPM: 58.1
2483 Female, age 94, right hemisphere 65.0
2111 Female, age 85, right hemisphere 62.1
2778 Female, age 91, both hemispheres 59.5
2566 Female, age 72, unknown 59.2
2287 Male, age 75, right hemisphere 57.7
2037 Male, age 80, right hemisphere 52.1
1818 Male, age 74, unknown 51.1
Nucleus accumbens
nTPM: 60.2
1783 Male, age 74, unknown 65.4
2286 Male, age 75, left hemisphere 64.9
2391 Female, age 94, left hemisphere 62.7
1806 Female, age 85, left hemisphere 61.8
2824 Male, age 61, right hemisphere 59.5
2698 Female, age 72, unknown 57.5
2732 Male, age 80, right hemisphere 56.6
1856 Female, age 91, right hemisphere 53.0
Nucleus basalis of Meynert
nTPM: 60.4
2393 Male, age 80, right hemisphere 63.2
2484 Female, age 94, left hemisphere 62.4
2821 Male, age 75, both hemispheres 62.3
2569 Male, age 61, both hemispheres 53.6
Nucleus of the diagonal band
nTPM: 58.6
1979 Male, age 74, unknown 61.5
1812 Female, age 91, both hemispheres 59.8
2029 Male, age 61, right hemisphere 59.0
2775 Male, age 80, right hemisphere 56.5
2195 Female, age 85, both hemispheres 56.2
Putamen
nTPM: 66.1
2466 Female, age 79, unknown 70.2
2489 Female, age 72, unknown 69.1
1829 Male, age 74, unknown 68.2
2647 Male, age 75, left hemisphere 67.4
1838 Male, age 80, right hemisphere 65.6
2482 Female, age 94, left hemisphere 62.5
1937 Female, age 91, right hemisphere 59.7
Septal nuclei
nTPM: 56.7
2009 Female, age 91, both hemispheres 64.6
2629 Female, age 94, right hemisphere 59.6
1960 Male, age 74, unknown 58.9
2199 Male, age 80, right hemisphere 56.2
2031 Female, age 72, unknown 55.2
2059 Female, age 85, both hemispheres 53.2
2394 Male, age 61, left hemisphere 48.9
Stria terminalis, bed nucleus
nTPM: 57.2
1974 Female, age 91, both hemispheres 60.3
2201 Male, age 74, unknown 57.0
2486 Female, age 94, both hemispheres 54.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 29.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.7
Samples: 300

Max nTPM: 50.5
Min nTPM: 16.5
Std nTPM: 4.7
Median nTPM: 27.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 43.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 40.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 39.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 38.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 38.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 38.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 38.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 37.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 37.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 37.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 285

Max nTPM: 37.8
Min nTPM: 13.3
Std nTPM: 4.2
Median nTPM: 22.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 37.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 35.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 32.9
GTEX-RNOR-0011-R6A-SM-GRR2T 50-59 years, female 32.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 32.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 32.0
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 31.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 31.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 31.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 31.6
GTEX-PVOW-0011-R6A-SM-H6Q8P 40-49 years, male 31.4
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Brain - Putamen (basal ganglia)
Average nTPM: 29.4
Samples: 254

Max nTPM: 57.4
Min nTPM: 17.1
Std nTPM: 6.0
Median nTPM: 28.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 57.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.8
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 48.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 47.2
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 45.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 44.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 43.0
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 42.7
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 42.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 42.4
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 41.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.9
FF:10164-103B2 76 years, female 55.9
Nucleus accumbens
Scaled Tags Per Million: 69.6
FF:10037-101F1 23-56 years, mixed 69.6
Putamen
Scaled Tags Per Million: 56.1
FF:10176-103C5 60 years, female 56.1
Globus pallidus
Scaled Tags Per Million: 54.7
FF:10161-103A8 76 years, female 57.7
FF:10175-103C4 60 years, female 51.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 43.5
Pig sample Sample description nTPM
Caudate
nTPM: 37.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 34.9
Sample A Female 37.7
Sample B Female 34.9
Sample C Male 40.8
Sample D Male 36.0
Putamen
nTPM: 43.5
Samples: 4

Max nTPM: 51.6
Min nTPM: 39.2
Sample A Female 41.4
Sample B Female 39.2
Sample C Male 51.6
Sample D Male 41.7
Septum
nTPM: 42.8
Samples: 4

Max nTPM: 46.2
Min nTPM: 41.1
Sample A Female 46.2
Sample B Female 41.8
Sample C Male 42.1
Sample D Male 41.1
Ventral pallidum
nTPM: 40.1
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.5
Sample A Female 41.4
Sample B Female 42.0
Sample C Male 37.5
Sample D Male 39.3

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 185.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 185.2
Samples: 4

Max nTPM: 199.6
Min nTPM: 178.6
Sample A Male 178.6
Sample B Male 180.2
Sample C Female 199.6
Sample D Female 182.5
Septum
nTPM: 128.4
Samples: 4

Max nTPM: 139.5
Min nTPM: 123.9
Sample A Male 124.1
Sample B Male 126.0
Sample C Female 123.9
Sample D Female 139.5
Ventral forebrain
nTPM: 146.7
Samples: 4

Max nTPM: 151.2
Min nTPM: 139.4
Sample A Male 151.2
Sample B Male 139.4
Sample C Female 147.5
Sample D Female 148.7

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 21.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 21.2
69885702 Antisense, RP_050512_03_C06, Mouse strain C57BL/6J (56 days, male) 21.2
Pallidum
Expression energy: 20.1
69885702 Antisense, RP_050512_03_C06, Mouse strain C57BL/6J (56 days, male) 20.1

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