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  • PACSIN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:166.1 nTPM
HPA Brain:259.9 nTPM
GTEx:166.1 nTPM
FANTOM5:235.7 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:167.6 nTPM
Allen mouse:20.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.9
Sample id Sample description nTPM
Amygdala
nTPM: 140.6
2814 Male, age 76, right hemisphere 196.6
2517 Female, age 94, left hemisphere 184.3
1987 Female, age 91, left hemisphere 157.6
2514 Male, age 75, right hemisphere 107.9
2695 Female, age 67, right hemisphere 56.4
Basal amygdala
nTPM: 259.9
2685 Female, age 94, left hemisphere 324.3
2827 Female, age 67, right hemisphere 307.6
2243 Female, age 91, right hemisphere 301.5
2110 Male, age 80, left hemisphere 229.7
1955 Male, age 76, both hemispheres 204.4
2609 Male, age 75, right hemisphere 192.1
Central amygdala
nTPM: 221.1
2826 Female, age 94, left hemisphere 336.7
2239 Male, age 80, left hemisphere 249.0
2701 Female, age 91, right hemisphere 180.0
1905 Male, age 76, both hemispheres 172.9
2515 Male, age 75, right hemisphere 166.7
Corticomedial amygdala
nTPM: 216.4
2535 Female, age 67, right hemisphere 281.4
2829 Male, age 80, left hemisphere 248.5
2429 Female, age 94, left hemisphere 229.7
2242 Female, age 91, right hemisphere 190.2
2240 Male, age 76, both hemispheres 174.7
2428 Male, age 75, right hemisphere 173.9
Lateral amygdala
nTPM: 225.6
2534 Female, age 94, left hemisphere 396.1
2256 Male, age 80, left hemisphere 262.6
2255 Female, age 91, right hemisphere 226.0
1883 Male, age 76, both hemispheres 185.0
2830 Female, age 67, right hemisphere 177.9
2516 Male, age 75, right hemisphere 105.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 166.1
Samples: 181

Max nTPM: 412.3
Min nTPM: 12.0
Std nTPM: 90.5
Median nTPM: 153.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 412.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 381.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 377.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 352.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 350.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 349.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 348.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 341.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 340.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 335.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 334.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 333.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 332.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 327.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 315.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 304.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 301.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 297.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 297.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 295.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 291.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 282.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 277.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 275.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 270.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 268.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 267.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 266.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 263.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 253.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 250.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 248.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 248.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 245.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 245.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 245.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 241.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 240.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 240.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 238.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 236.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 235.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 235.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 234.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 232.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 231.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 228.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 224.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 223.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 223.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 222.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 218.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 214.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 212.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 212.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 211.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 209.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 207.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 203.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 202.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 202.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 202.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 201.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 200.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 200.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 198.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 194.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 194.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 194.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 193.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 190.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 186.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 184.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 183.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 183.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 182.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 176.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 175.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 172.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 169.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 168.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 166.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 165.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 165.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 154.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 154.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 153.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 150.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 150.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 147.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 147.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 146.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 146.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 142.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 142.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 142.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 140.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 139.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 138.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 136.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 134.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 132.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 127.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 124.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 124.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 116.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 116.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 115.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 111.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 108.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 105.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 103.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 103.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 99.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 98.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 95.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 94.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 92.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 90.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 90.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 89.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 88.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 83.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 79.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 77.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 75.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 74.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 73.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 71.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 69.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 65.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 65.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 58.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 57.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 57.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 56.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 49.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 48.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 44.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 42.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 42.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 42.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 40.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 39.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 38.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 37.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 35.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 12.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 235.7
FF:10151-102I7 76 years, female 235.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.3
Pig sample Sample description nTPM
Amygdala
nTPM: 86.4
Samples: 4

Max nTPM: 113.7
Min nTPM: 63.6
Sample A Female 113.7
Sample B Female 63.6
Sample C Male 84.3
Sample D Male 83.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 167.6
Samples: 4

Max nTPM: 183.3
Min nTPM: 156.2
Sample A Male 168.4
Sample B Male 162.5
Sample C Female 183.3
Sample D Female 156.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.9
74047926 Antisense, RP_051214_02_D11, Mouse strain C57BL/6J (56 days, male) 21.2
68196981 Antisense, RP_040928_01_B02, Mouse strain C57BL/6J (56 days, male) 20.6

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