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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:200.6 nTPM
GTEx:200.6 nTPM
FANTOM5:1174.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019010Antibody HPA019070Antibody HPA026643
Squamous epithelial cells LowMediumHigh






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 200.6
Samples: 170

Max nTPM: 377.2
Min nTPM: 91.0
Std nTPM: 52.8
Median nTPM: 193.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 377.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 344.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 331.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 328.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 318.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 311.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 306.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 302.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 300.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 297.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 295.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 293.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 288.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 288.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 288.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 272.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 269.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 267.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 263.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 262.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 261.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 261.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 259.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 256.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 255.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 254.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 247.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 245.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 245.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 244.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 244.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 243.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 242.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 241.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 241.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 239.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 239.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 239.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 238.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 237.3
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 235.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 234.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 234.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 233.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 231.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 229.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 227.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 225.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 225.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 225.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 224.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 223.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 223.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 222.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 220.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 220.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 220.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 220.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 219.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 218.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 217.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 217.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 215.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 215.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 214.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 214.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 210.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 210.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 210.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 210.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 210.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 209.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 209.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 207.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 206.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 206.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 205.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 203.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 202.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 202.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 198.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 198.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 196.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 194.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 194.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 192.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 192.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 192.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 191.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 190.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 190.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 189.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 189.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 189.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 187.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 187.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 186.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 186.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 186.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 186.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 185.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 182.2
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 181.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 181.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 178.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 178.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 176.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 176.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 175.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 173.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 173.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 172.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 172.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 172.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 170.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 169.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 169.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 168.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 168.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 168.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 168.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 165.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 165.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 161.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 161.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 160.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 160.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 159.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 159.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 158.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 158.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 156.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 156.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 155.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 154.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 153.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 152.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 151.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 151.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 147.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 147.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 147.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 146.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 145.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 144.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 144.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 144.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 144.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 144.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 144.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 141.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 139.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 139.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 137.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 137.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 136.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 134.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 131.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 130.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 128.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 128.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 127.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 126.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 121.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 121.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 119.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 109.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 106.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 101.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 91.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1174.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1174.0
FF:10204-103F6 68 years, female 1174.0

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