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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:206.5 nTPM
GTEx:206.5 nTPM
FANTOM5:1174.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019010Antibody HPA019070Antibody HPA026643
Squamous epithelial cells LowMediumHigh






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 206.5
Samples: 156

Max nTPM: 394.0
Min nTPM: 108.1
Std nTPM: 53.2
Median nTPM: 202.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 394.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 349.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 337.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 335.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 326.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 317.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 313.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 307.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 306.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 300.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 296.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 294.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 294.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 293.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 276.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 275.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 269.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 269.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 267.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 266.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 266.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 263.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 260.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 259.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 253.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 251.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 249.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 249.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 248.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 247.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 247.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 245.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 244.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 243.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 242.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 242.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 241.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 241.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 237.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 237.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 236.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 236.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 232.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 230.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 229.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 229.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 229.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 228.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 225.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 225.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 225.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 224.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 224.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 223.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 223.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 222.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 221.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 220.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 219.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 219.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 216.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 215.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 214.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 214.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 214.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 213.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 213.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 212.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 211.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 210.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 210.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 209.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 209.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 207.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 206.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 206.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 203.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 202.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 201.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 200.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 199.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 199.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 197.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 196.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 196.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 195.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 194.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 194.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 193.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 193.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 193.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 192.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 191.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 191.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 189.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 189.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 189.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 189.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 184.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 182.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 181.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 180.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 180.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 179.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 177.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 175.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 175.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 175.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 175.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 173.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 172.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 172.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 170.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 170.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 169.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 168.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 165.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 164.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 162.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 162.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 162.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 162.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 161.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 160.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 160.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 159.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 155.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 154.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 154.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 151.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 149.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 149.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 148.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 148.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 147.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 146.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 146.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 146.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 144.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 141.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 140.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 140.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 140.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 137.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 136.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 134.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 133.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 130.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 130.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 130.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 129.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 123.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 123.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 122.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 111.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 108.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1174.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1174.0
FF:10204-103F6 68 years, female 1174.0

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