HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:64.2 nTPM
HPA Brain:49.9 nTPM
GTEx:64.2 nTPM
FANTOM5:38.8 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:15.8 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039571Antibody HPA039872
Glial cells Not detectedLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Hippocampus
nTPM: 48.4
1898 Male, age 80, left hemisphere 57.5
2529 Female, age 94, left hemisphere 54.5
1911 Female, age 85, right hemisphere 47.5
2621 Female, age 67, right hemisphere 44.5
2148 Female, age 91, left hemisphere 43.8
1855 Male, age 76, left hemisphere 42.7
Dentate gyrus
nTPM: 49.9
1927 Female, age 91, both hemispheres 55.0
2528 Male, age 74, both hemispheres 54.8
2530 Female, age 94, left hemisphere 54.1
2010 Male, age 76, both hemispheres 50.2
2531 Female, age 67, both hemispheres 45.7
2246 Female, age 85, both hemispheres 39.4
Entorhinal gyrus
nTPM: 46.3
2117 Female, age 91, right hemisphere 52.4
1938 Female, age 85, left hemisphere 49.2
2764 Male, age 80, right hemisphere 49.1
1787 Male, age 76, left hemisphere 44.4
2686 Male, age 75, right hemisphere 41.5
2613 Female, age 94, left hemisphere 41.3
Hippocampus, CA1
nTPM: 48.0
2749 Male, age 80, left hemisphere 56.0
1873 Female, age 85, both hemispheres 49.1
2082 Female, age 91, right hemisphere 47.2
2527 Male, age 74, both hemispheres 45.3
2045 Male, age 76, both hemispheres 42.3
Hippocampus, CA2
nTPM: 49.6
1963 Male, age 80, left hemisphere 57.9
2249 Male, age 74, both hemispheres 56.8
1892 Male, age 76, both hemispheres 51.4
2437 Female, age 94, left hemisphere 46.8
2113 Female, age 91, right hemisphere 45.8
1940 Female, age 85, left hemisphere 38.9
Hippocampus, CA3
nTPM: 48.3
2436 Male, age 74, both hemispheres 57.4
1867 Male, age 76, both hemispheres 49.5
2620 Female, age 94, left hemisphere 47.7
1891 Female, age 85, both hemispheres 47.3
2137 Male, age 80, left hemisphere 46.7
2861 Female, age 67, both hemispheres 41.2
Parahippocampal cortex
nTPM: 38.0
1933 Female, age 85, both hemispheres 43.5
1990 Female, age 91, right hemisphere 43.4
2250 Female, age 67, right hemisphere 43.3
2018 Male, age 76, both hemispheres 43.1
2245 Female, age 91, both hemispheres 38.5
1850 Male, age 80, both hemispheres 37.9
2692 Male, age 74, both hemispheres 35.4
2622 Female, age 67, right hemisphere 32.7
2532 Female, age 72, left hemisphere 31.5
2693 Female, age 94, both hemispheres 30.5
Perirhinal gyrus
nTPM: 42.0
1847 Female, age 91, left hemisphere 51.8
1794 Male, age 80, right hemisphere 48.7
1841 Female, age 85, right hemisphere 40.9
2521 Female, age 94, right hemisphere 35.9
2848 Male, age 76, right hemisphere 32.6
Subiculum
nTPM: 47.6
2042 Male, age 76, both hemispheres 55.3
2729 Female, age 91, right hemisphere 49.0
1901 Male, age 80, both hemispheres 48.3
2619 Male, age 74, both hemispheres 47.2
1977 Female, age 85, both hemispheres 46.1
2438 Female, age 94, left hemisphere 39.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 64.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 64.2
Samples: 255

Max nTPM: 144.9
Min nTPM: 21.2
Std nTPM: 16.2
Median nTPM: 61.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 144.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 117.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 114.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 112.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 111.2
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 105.6
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 104.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 101.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 100.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 97.9
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 96.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.8
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 34.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 5.8
Pig sample Sample description nTPM
Subiculum
nTPM: 5.2
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Female 6.1
Sample B Female 5.2
Sample C Male 4.7
Sample D Male 4.8
Dorsal hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.4
Sample A Female 6.8
Sample B Female 5.4
Sample C Male 5.5
Sample D Male 5.6
Entorhinal cortex
nTPM: 5.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 5.0
Sample A Female 5.5
Sample B Female 5.2
Sample C Male 5.0
Sample D Male 5.1
Ventral hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Female 6.2
Sample B Female 5.0
Sample C Male 6.3
Sample D Male 5.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 15.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.6
Sample A Male 16.2
Sample B Male 17.5
Sample C Female 16.0
Sample D Female 13.6
Hippocampal formation
nTPM: 15.6
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.8
Sample A Male 18.4
Sample B Male 12.8
Sample C Female 14.3
Sample D Female 16.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68441580 Antisense, RP_041214_02_F04, Mouse strain C57BL/6J (56 days, male) 0.4

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