MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA Brain:76.5 nTPM
GTEx:36.9 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:9.9 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.8
2586 Male, age 75, left hemisphere 122.6
2828 Female, age 72, unknown 89.8
2666 Male, age 74, left hemisphere 73.1
1827 Male, age 72, unknown 72.7
2219 Male, age 76, both hemispheres 71.2
2019 Male, age 18, unknown 65.2
2411 Female, age 72, unknown 55.9
1833 Male, age 53, unknown 49.9
1830 Male, age 51, unknown 49.6
1870 Female, age 42, unknown 47.9
Dorsal raphe nucleus
nTPM: 58.4
2047 Male, age 72, unknown 67.4
2298 Female, age 72, unknown 63.3
1828 Male, age 53, unknown 60.8
2016 Female, age 72, unknown 51.0
2750 Male, age 76, both hemispheres 49.5
Inferior colliculus
nTPM: 65.0
2097 Female, age 72, unknown 69.2
1890 Male, age 53, unknown 67.3
1848 Female, age 42, unknown 66.5
2849 Male, age 72, unknown 56.9
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Periaquaductal grey, anterior
nTPM: 76.5
2502 Female, age 75, unknown 85.3
1795 Male, age 51, unknown 74.4
1947 Male, age 18, unknown 69.9
Periaquaductal grey, dorsal
nTPM: 54.3
1840 Male, age 53, unknown 65.0
2464 Female, age 72, unknown 58.6
1831 Male, age 72, unknown 55.4
2850 Male, age 76, both hemispheres 38.2
Periaquaductal grey, lateral
nTPM: 47.8
2053 Male, age 18, unknown 56.4
2140 Male, age 76, both hemispheres 43.7
2272 Male, age 74, both hemispheres 43.5
Pretectal area
nTPM: 69.0
1816 Male, age 51, unknown 100.4
2007 Male, age 72, unknown 95.1
1817 Female, age 42, unknown 85.3
1944 Female, age 72, unknown 84.3
1815 Male, age 53, unknown 79.3
2407 Male, age 75, both hemispheres 62.7
2667 Female, age 75, unknown 60.8
2224 Female, age 72, unknown 51.2
2825 Male, age 18, unknown 50.8
2316 Male, age 76, right hemisphere 44.6
2273 Male, age 74, both hemispheres 44.2
Red nucleus
nTPM: 54.0
2584 Male, age 75, left hemisphere 73.5
2588 Male, age 74, left hemisphere 67.6
2785 Male, age 18, unknown 67.0
2503 Female, age 72, unknown 55.8
2769 Male, age 72, unknown 55.8
2227 Male, age 72, unknown 53.2
1954 Female, age 42, unknown 52.1
2725 Female, age 75, unknown 49.8
1821 Female, age 72, unknown 47.2
1904 Male, age 53, unknown 47.2
1865 Male, age 51, unknown 41.9
2823 Male, age 76, right hemisphere 37.5
Substantia nigra
nTPM: 67.1
2665 Male, age 74, both hemispheres 93.2
1916 Female, age 42, unknown 90.8
1889 Female, age 72, unknown 76.0
2583 Male, age 75, right hemisphere 72.1
1851 Male, age 51, unknown 71.6
2590 Female, age 75, unknown 65.9
2699 Male, age 18, unknown 58.7
1941 Male, age 53, unknown 57.9
2241 Male, age 72, unknown 46.6
2409 Female, age 72, unknown 38.0
Superior colliculus
nTPM: 68.4
2664 Male, age 75, both hemispheres 106.8
2087 Female, age 72, unknown 83.8
1796 Male, age 53, unknown 77.4
2261 Male, age 18, unknown 71.8
2668 Female, age 75, unknown 67.9
1839 Male, age 51, unknown 65.5
2587 Male, age 74, left hemisphere 57.6
1995 Male, age 72, unknown 53.2
1895 Male, age 76, right hemisphere 50.7
1913 Female, age 42, unknown 49.2
Ventral tegmental area
nTPM: 63.2
1915 Female, age 42, unknown 73.0
2410 Female, age 72, unknown 70.7
1942 Male, age 51, unknown 66.5
2218 Male, age 76, both hemispheres 61.8
2021 Male, age 53, unknown 57.2
2223 Female, age 72, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.9
Samples: 183

Max nTPM: 121.9
Min nTPM: 5.3
Std nTPM: 16.8
Median nTPM: 36.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 121.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 91.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 86.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 76.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 69.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 66.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 60.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 60.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.2
FF:10158-103A5 76 years, female 15.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 17.5
Sample A Female 26.8
Sample B Female 17.8
Sample C Male 29.0
Sample D Male 17.5
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 50.7
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 18.5
Sample C Male 50.7
Sample D Male 34.7
Periaqueductal gray
nTPM: 19.5
Samples: 3

Max nTPM: 25.0
Min nTPM: 15.9
Sample B Female 17.6
Sample C Male 25.0
Sample D Male 15.9
Superior colliculi
nTPM: 33.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 30.2
Sample A Female 32.5
Sample B Female 30.2
Sample C Male 40.9
Sample D Male 31.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.9
Sample A Male 11.3
Sample B Male 8.9
Sample C Female 9.0
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
71022633 Antisense, RP_050713_04_H03, Mouse strain C57BL/6J (56 days, male) 3.9

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