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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:40.5 nTPM
HPA:27.7 nTPM
GTEx:40.5 nTPM
FANTOM5:25.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010973Antibody CAB016734
Endocrine cells High-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Medium
Goblet cells Not detected-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.7
overview
Male, age 65
Small intestine sample 232
nTPM: 2.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 95
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 5.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 7.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 40.5
Samples: 187

Max nTPM: 221.2
Min nTPM: 0.0
Std nTPM: 39.9
Median nTPM: 30.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 221.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 153.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 143.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 138.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 127.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 126.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 126.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 116.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 116.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 114.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 108.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 107.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 106.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 104.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 99.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 98.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 97.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 94.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 93.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 92.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 92.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 91.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 90.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 88.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 87.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 84.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 83.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 81.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 81.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 81.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 80.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 80.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 80.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 79.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 79.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 78.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 78.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 78.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 76.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 75.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 72.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 70.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 70.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 70.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 69.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 69.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 68.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 67.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 67.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 67.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 66.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 63.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 62.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 61.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 61.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 60.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 60.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 57.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 56.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 56.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 56.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 56.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 55.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 53.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 52.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 50.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 49.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 49.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 49.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 48.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 48.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 48.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 47.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 47.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 47.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 44.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 44.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 43.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 43.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 43.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 41.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 41.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 40.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 39.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 39.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 37.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 36.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 35.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 35.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 35.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 33.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 33.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 30.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 28.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 26.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 25.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 25.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 23.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 23.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 22.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 21.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 21.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 21.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 21.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 20.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 20.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 20.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 20.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 19.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 17.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 17.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 17.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 15.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 14.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 14.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 13.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 13.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 13.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 13.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 12.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 12.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 11.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 10.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 9.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 8.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 8.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 8.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 7.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 7.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 6.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 6.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 5.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 4.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 4.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 4.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 4.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 3.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 3.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 3.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 2.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2.0
GTEX-1192X-2526-SM-59868 50-59 years, male 1.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 0.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 0.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 25.5
FF:10024-101D6 15,40,85 years, mixed 25.5

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