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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:357.2 nTPM
GTEx:357.2 nTPM
FANTOM5:136.2 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA054148
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA059929
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 357.2
Samples: 105

Max nTPM: 796.0
Min nTPM: 121.4
Std nTPM: 118.1
Median nTPM:
218_1 71 years, female 796.0
322_1 76 years, male 655.9
447_1 81 years, male 571.4
350_1 84 years, female 552.3
316_1 62 years, male 551.7
237_1 82 years, male 545.2
319_1 81 years, male 524.1
321_1 62 years, female 521.5
379_1 60 years, male 519.2
6_1 73 years, female 510.2
377_1 82 years, female 509.1
335_1 73 years, female 506.0
376_1 75 years, female 497.4
163_1 78 years, male 495.9
354_1 81 years, female 484.4
352_1 62 years, male 483.0
452_1 88 years, female 477.5
172_1 72 years, female 469.5
349_1 83 years, male 468.6
2_1 77 years, female 458.2
375_1 74 years, female 456.3
295_1 61 years, female 453.3
286_1 68 years, female 443.1
348_1 84 years, male 438.1
293_1 68 years, female 435.9
405_1 91 years, male 434.4
480_1 63 years, male 433.6
503_1 68 years, male 431.5
307_1 66 years, female 425.0
243_1 75 years, male 420.9
318_1 68 years, male 420.1
355_1 70 years, female 415.5
351_1 91 years, male 412.0
425_1 59 years, female 404.1
386_1 76 years, male 403.3
189_1 76 years, male 402.2
356_1 87 years, female 401.3
394_1 75 years, female 401.2
404_1 82 years, female 399.3
153_1 70 years, female 396.6
229_1 69 years, female 394.6
389_1 86 years, female 393.0
406_1 79 years, male 388.3
495_1 57 years, female 388.0
353_1 82 years, female 374.0
320_1 89 years, female 372.3
292_1 71 years, male 359.6
251_1 78 years, male 357.8
173_1 67 years, male 356.6
384_1 83 years, male 352.4
142_1 61 years, female 351.2
265_1 87 years, male 349.4
145_1 84 years, male 345.9
499_1 55 years, female 343.8
177_1 74 years, male 342.5
126_1 63 years, male 340.8
526_1 61 years, male 340.8
266_1 85 years, male 338.4
43_1 64 years, female 337.8
246_1 77 years, male 336.8
264_1 73 years, female 330.7
291_1 76 years, male 327.9
217_1 76 years, male 325.3
518_1 75 years, female 324.4
4_1 88 years, female 323.5
517_1 88 years, male 319.2
324_1 76 years, male 315.8
35_1 74 years, female 312.5
317_1 60 years, male 309.6
396_1 62 years, male 309.4
468_1 89 years, male 303.4
115_1 83 years, male 303.3
347_1 72 years, male 300.9
506_1 65 years, male 294.1
162_1 79 years, female 289.4
137_1 83 years, male 284.2
9_1 66 years, female 281.4
81_1 67 years, male 280.9
311_1 78 years, male 272.3
466_1 57 years, female 272.1
254_1 77 years, female 266.8
17_1 71 years, male 259.5
18_1 88 years, male 256.4
313_1 79 years, female 256.4
288_1 66 years, female 255.5
117_1 61 years, male 253.8
314_1 67 years, male 251.8
308_1 70 years, female 246.9
32_1 67 years, male 244.7
41_1 94 years, female 233.8
42_1 85 years, male 229.2
120_1 70 years, female 226.9
109_1 81 years, female 225.4
139_1 64 years, female 221.3
99_1 64 years, male 208.9
415_1 77 years, female 208.8
315_1 62 years, female 186.8
414_1 84 years, female 180.3
149_1 88 years, male 176.9
119_1 70 years, female 160.9
501_1 88 years, male 158.2
490_1 67 years, female 152.1
89_1 63 years, male 130.3
413_1 59 years, female 125.2
491_1 89 years, female 121.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 136.2
FF:10030-101E3 24-65 years, mixed 136.2

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