We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DTNA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DTNA
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:193.1 nTPM
HPA Brain:386.4 nTPM
GTEx:193.1 nTPM
FANTOM5:656.8 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:72.2 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.4
Sample id Sample description nTPM
Amygdala
nTPM: 386.4
1987 Female, age 91, left hemisphere 537.5
2695 Female, age 67, right hemisphere 391.6
2514 Male, age 75, right hemisphere 375.6
2517 Female, age 94, left hemisphere 347.5
2814 Male, age 76, right hemisphere 280.0
Basal amygdala
nTPM: 324.2
2609 Male, age 75, right hemisphere 442.6
2243 Female, age 91, right hemisphere 399.0
2110 Male, age 80, left hemisphere 335.3
1955 Male, age 76, both hemispheres 305.1
2685 Female, age 94, left hemisphere 267.8
2827 Female, age 67, right hemisphere 195.4
Central amygdala
nTPM: 381.5
2515 Male, age 75, right hemisphere 545.5
2701 Female, age 91, right hemisphere 381.2
2239 Male, age 80, left hemisphere 367.7
1905 Male, age 76, both hemispheres 316.6
2826 Female, age 94, left hemisphere 296.6
Corticomedial amygdala
nTPM: 359.5
2242 Female, age 91, right hemisphere 472.2
2428 Male, age 75, right hemisphere 442.5
2829 Male, age 80, left hemisphere 364.1
2240 Male, age 76, both hemispheres 340.1
2429 Female, age 94, left hemisphere 314.9
2535 Female, age 67, right hemisphere 223.5
Lateral amygdala
nTPM: 312.0
2256 Male, age 80, left hemisphere 421.0
2516 Male, age 75, right hemisphere 373.9
2255 Female, age 91, right hemisphere 333.2
1883 Male, age 76, both hemispheres 269.0
2830 Female, age 67, right hemisphere 237.9
2534 Female, age 94, left hemisphere 237.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 193.1
Samples: 181

Max nTPM: 821.5
Min nTPM: 38.9
Std nTPM: 116.2
Median nTPM: 155.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 821.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 604.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 575.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 557.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 532.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 515.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 497.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 491.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 440.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 439.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 425.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 417.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 396.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 389.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 370.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 364.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 361.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 354.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 335.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 328.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 320.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 315.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 308.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 303.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 293.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 290.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 288.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 287.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 282.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 273.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 271.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 265.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 261.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 259.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 255.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 244.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 240.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 239.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 237.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 235.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 233.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 230.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 225.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 220.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 219.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 218.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 216.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 213.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 212.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 212.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 211.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 209.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 208.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 205.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 203.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 203.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 202.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 202.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 200.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 198.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 197.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 194.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 192.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 190.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 190.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 188.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 187.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 184.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 184.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 182.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 180.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 178.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 178.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 177.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 177.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 177.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 177.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 175.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 170.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 167.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 163.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 162.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 162.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 160.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 158.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 156.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 156.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 155.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 154.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 154.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 154.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 152.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 151.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 150.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 149.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 147.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 147.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 147.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 146.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 145.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 145.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 142.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 142.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 141.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 141.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 140.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 139.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 137.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 137.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 133.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 132.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 131.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 131.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 129.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 128.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 126.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 124.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 124.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 123.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 122.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 122.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 118.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 117.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 117.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 115.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 115.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 115.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 113.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 113.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 113.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 113.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 112.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 108.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 107.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 104.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 103.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 102.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 100.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 99.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 95.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 95.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 94.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 94.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 93.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 88.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 87.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 85.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 75.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 71.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 70.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 64.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 59.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 50.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 38.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

656.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 656.8
FF:10151-102I7 76 years, female 656.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
Pig sample Sample description nTPM
Amygdala
nTPM: 75.4
Samples: 4

Max nTPM: 80.4
Min nTPM: 69.5
Sample A Female 69.5
Sample B Female 80.4
Sample C Male 72.5
Sample D Male 79.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 72.2
Samples: 4

Max nTPM: 74.7
Min nTPM: 68.5
Sample A Male 72.7
Sample B Male 68.5
Sample C Female 74.7
Sample D Female 72.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
77413704 Antisense, RP_070205_01_E07, Mouse strain C57BL/6J (56 days, male) 4.6
70919167 Antisense, RP_050712_04_C11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo