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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:172.7 nTPM
FANTOM5:698.5 Scaled Tags Per Million
Pig:71.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA071177Antibody CAB015196
Glial cells HighMedium
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 172.7
Samples: 300

Max nTPM: 688.7
Min nTPM: 40.0
Std nTPM: 112.3
Median nTPM: 139.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 688.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 658.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 643.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 615.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 573.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 552.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 552.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 531.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 496.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 483.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 455.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 441.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 440.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 436.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 423.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 388.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 387.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 375.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 361.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 355.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 355.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 354.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 352.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 351.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 346.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 341.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 335.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 335.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 327.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 326.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 325.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 316.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 309.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 308.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 307.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 304.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 296.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 293.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 283.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 283.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 278.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 274.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 274.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 274.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 271.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 258.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 254.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 249.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 248.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 246.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 243.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 239.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 237.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 235.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 234.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 231.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 230.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 229.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 228.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 226.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 225.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 224.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 222.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 222.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 221.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 216.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 215.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 212.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 211.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 211.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 211.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 206.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 204.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 203.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 202.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 201.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 200.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 199.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 196.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 195.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 192.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 190.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 189.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 189.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 188.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 186.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 184.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 184.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 184.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 183.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 182.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 181.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 179.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 179.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 177.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 176.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 176.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 175.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 175.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 175.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 173.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 173.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 169.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 169.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 169.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 167.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 166.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 166.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 165.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 164.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 163.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 163.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 162.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 162.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 162.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 160.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 159.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 159.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 158.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 156.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 155.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 154.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 154.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 154.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 153.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 153.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 153.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 152.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 151.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 151.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 151.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 151.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 148.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 146.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 146.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 145.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 145.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 144.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 143.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 143.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 143.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 142.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 142.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 142.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 141.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 141.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 141.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 140.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 140.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 139.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 138.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 137.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 137.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 134.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 134.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 133.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 133.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 132.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 132.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 131.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 131.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 131.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 131.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 131.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 131.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 129.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 129.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 127.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 127.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 127.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 126.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 126.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 126.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 125.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 124.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 122.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 122.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 122.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 122.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 121.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 121.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 120.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 120.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 119.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 119.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 119.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 118.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 118.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 118.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 117.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 117.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 116.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 116.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 114.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 113.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 112.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 112.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 111.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 111.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 111.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 109.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 108.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 107.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 107.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 106.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 105.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 104.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 104.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 103.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 103.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 103.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 103.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 102.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 101.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 101.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 101.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 101.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 101.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 100.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 99.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 98.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 97.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 96.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 95.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 95.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 94.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 93.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 93.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 93.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 92.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 92.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 92.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 92.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 91.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 91.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 90.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 90.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 89.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 89.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 88.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 87.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 87.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 86.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 85.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 84.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 84.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 82.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 81.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 81.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 81.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 81.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 80.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 80.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 80.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 80.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 79.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 79.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 79.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 78.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 77.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 77.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 76.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 76.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 76.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 73.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 73.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 73.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 73.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 72.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 71.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 71.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 70.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 68.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 66.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 66.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 65.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 65.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 63.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 60.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 57.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 57.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 57.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 50.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 46.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 40.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

698.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 698.5
FF:10164-103B2 76 years, female 698.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.5
Pig sample Sample description nTPM
Caudate
nTPM: 71.5
Samples: 4

Max nTPM: 76.6
Min nTPM: 64.5
Sample A Female 64.5
Sample B Female 76.6
Sample C Male 76.0
Sample D Male 69.0

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