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ANXA1
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  • ANXA1
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:28.4 nTPM
HPA:28.4 nTPM
GTEx:46.0 nTPM
FANTOM5:35.7 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:5.1 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA011271Antibody HPA011272Antibody CAB013023Antibody CAB035987Antibody CAB058693
Glial cells Not detectedNot detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedMediumNot detectedNot detected











HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Hippocampus
nTPM: 24.8
1898 Male, age 80, left hemisphere 26.0
2529 Female, age 94, left hemisphere 25.6
1855 Male, age 76, left hemisphere 25.5
2621 Female, age 67, right hemisphere 25.2
1911 Female, age 85, right hemisphere 24.7
2148 Female, age 91, left hemisphere 21.7
Dentate gyrus
nTPM: 26.3
2010 Male, age 76, both hemispheres 35.8
2528 Male, age 74, both hemispheres 26.8
2530 Female, age 94, left hemisphere 24.4
2531 Female, age 67, both hemispheres 24.4
2246 Female, age 85, both hemispheres 24.0
1927 Female, age 91, both hemispheres 22.2
Entorhinal gyrus
nTPM: 21.6
2117 Female, age 91, right hemisphere 24.9
1787 Male, age 76, left hemisphere 22.8
2686 Male, age 75, right hemisphere 21.1
1938 Female, age 85, left hemisphere 21.0
2764 Male, age 80, right hemisphere 20.1
2613 Female, age 94, left hemisphere 20.0
Hippocampus, CA1
nTPM: 24.5
2082 Female, age 91, right hemisphere 30.8
2045 Male, age 76, both hemispheres 25.0
1873 Female, age 85, both hemispheres 24.5
2527 Male, age 74, both hemispheres 22.2
2749 Male, age 80, left hemisphere 20.0
Hippocampus, CA2
nTPM: 28.4
2249 Male, age 74, both hemispheres 39.4
1940 Female, age 85, left hemisphere 33.1
2113 Female, age 91, right hemisphere 26.6
2437 Female, age 94, left hemisphere 24.6
1892 Male, age 76, both hemispheres 24.3
1963 Male, age 80, left hemisphere 22.4
Hippocampus, CA3
nTPM: 24.3
1867 Male, age 76, both hemispheres 30.7
2436 Male, age 74, both hemispheres 25.6
2137 Male, age 80, left hemisphere 22.8
2620 Female, age 94, left hemisphere 22.8
1891 Female, age 85, both hemispheres 22.1
2861 Female, age 67, both hemispheres 21.9
Parahippocampal cortex
nTPM: 22.4
2018 Male, age 76, both hemispheres 28.5
2532 Female, age 72, left hemisphere 22.9
2250 Female, age 67, right hemisphere 22.3
1990 Female, age 91, right hemisphere 22.2
2245 Female, age 91, both hemispheres 22.0
2622 Female, age 67, right hemisphere 21.9
1850 Male, age 80, both hemispheres 21.7
1933 Female, age 85, both hemispheres 21.6
2693 Female, age 94, both hemispheres 21.0
2692 Male, age 74, both hemispheres 19.9
Perirhinal gyrus
nTPM: 22.2
1841 Female, age 85, right hemisphere 23.8
2521 Female, age 94, right hemisphere 22.6
1794 Male, age 80, right hemisphere 22.4
2848 Male, age 76, right hemisphere 21.7
1847 Female, age 91, left hemisphere 20.4
Subiculum
nTPM: 23.4
2042 Male, age 76, both hemispheres 29.4
2729 Female, age 91, right hemisphere 23.9
1901 Male, age 80, both hemispheres 22.6
2438 Female, age 94, left hemisphere 21.8
2619 Male, age 74, both hemispheres 21.6
1977 Female, age 85, both hemispheres 20.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.0
Samples: 197

Max nTPM: 364.8
Min nTPM: 4.3
Std nTPM: 57.5
Median nTPM: 26.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 364.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 351.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 306.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 288.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 282.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 191.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 183.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 171.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 168.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 161.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 151.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 139.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 138.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 133.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 127.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 126.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 120.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 112.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 96.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 93.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 93.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 93.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 91.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 87.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 86.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 85.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 85.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 84.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 77.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 77.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 76.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 76.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 76.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 76.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 68.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 68.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 66.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 63.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 62.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 60.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 58.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 57.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 57.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 56.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 56.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 55.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 54.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 53.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 51.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 49.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 49.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 49.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 48.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 47.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 47.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 46.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 46.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 46.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 45.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 45.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 43.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 42.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 40.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 37.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 37.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 36.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 36.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 36.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 35.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 35.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 35.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 34.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 34.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 33.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 33.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 33.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 32.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 32.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 32.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 32.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 32.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 31.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 31.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 30.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 30.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 29.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 29.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 29.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 28.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 28.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 28.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 28.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 28.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 27.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 27.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 27.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 27.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 26.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 25.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 25.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 25.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 25.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 25.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 25.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 24.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 24.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 23.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 23.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 23.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 22.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 22.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 22.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 22.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 22.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 22.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 21.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 21.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 21.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 21.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 21.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 21.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 20.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 20.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 20.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 20.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 19.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 19.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 18.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 18.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 18.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 18.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 18.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 17.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 17.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 17.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 17.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 16.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 16.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 16.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 16.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 16.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 16.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 16.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 16.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 15.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 15.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 15.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 15.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 15.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 14.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 13.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 13.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 13.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 13.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 13.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 13.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 13.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 12.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 12.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 11.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 11.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 11.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 11.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 11.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 11.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 11.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 11.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 11.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 10.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 9.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 9.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 9.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 9.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 9.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 9.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 9.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 9.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 8.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 8.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 8.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 8.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 8.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 8.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 8.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 8.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 8.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 7.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 7.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 6.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 6.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 4.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 4.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 4.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.7
FF:10153-102I9 76 years, female 37.9
FF:10169-103B7 60 years, female 33.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 20.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.2
Samples: 4

Max nTPM: 29.1
Min nTPM: 12.3
Sample A Female 29.1
Sample B Female 12.3
Sample C Male 25.6
Sample D Male 13.9
Entorhinal cortex
nTPM: 9.6
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.1
Sample A Female 10.9
Sample B Female 10.8
Sample C Male 10.5
Sample D Male 6.1
Subiculum
nTPM: 11.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 6.2
Sample A Female 17.1
Sample B Female 8.4
Sample C Male 6.2
Sample D Male 14.2
Ventral hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 20.6
Min nTPM: 10.0
Sample A Female 20.6
Sample B Female 10.0
Sample C Male 11.7
Sample D Male 16.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.9
Sample A Male 4.9
Sample B Male 5.2
Sample C Female 5.4
Sample D Female 4.9
Hippocampal formation
nTPM: 2.4
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.4
Sample A Male 3.5
Sample B Male 1.4
Sample C Female 1.9
Sample D Female 2.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70813897 Antisense, RP_050725_02_E09, Mouse strain C57BL/6J (56 days, male) 0.3
68191372 Antisense, RP_041129_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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