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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:44.7 nTPM
HPA Brain:20.4 nTPM
GTEx:44.7 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:5.1 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011271Antibody HPA011272Antibody CAB013023Antibody CAB035987Antibody CAB058693Antibody CAB080415
Glial cells Not detectedNot detectedNot detectedNot detectedNot detectedMedium
Neuronal cells Not detectedNot detectedMediumNot detectedNot detectedMedium













HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.7
1898 Male, age 80, left hemisphere 15.4
2529 Female, age 94, left hemisphere 14.3
1855 Male, age 76, left hemisphere 14.1
2621 Female, age 67, right hemisphere 13.6
1911 Female, age 85, right hemisphere 12.7
2148 Female, age 91, left hemisphere 6.4
Dentate gyrus
nTPM: 15.7
2010 Male, age 76, both hemispheres 34.9
2528 Male, age 74, both hemispheres 17.1
2530 Female, age 94, left hemisphere 11.8
2531 Female, age 67, both hemispheres 11.7
2246 Female, age 85, both hemispheres 11.1
1927 Female, age 91, both hemispheres 7.3
Entorhinal gyrus
nTPM: 6.3
2117 Female, age 91, right hemisphere 12.9
1787 Male, age 76, left hemisphere 8.6
2686 Male, age 75, right hemisphere 5.3
1938 Female, age 85, left hemisphere 4.9
2613 Female, age 94, left hemisphere 3.1
2764 Male, age 80, right hemisphere 3.1
Hippocampus, CA1
nTPM: 12.2
2082 Female, age 91, right hemisphere 24.9
2045 Male, age 76, both hemispheres 13.0
1873 Female, age 85, both hemispheres 12.4
2527 Male, age 74, both hemispheres 7.5
2749 Male, age 80, left hemisphere 3.1
Hippocampus, CA2
nTPM: 20.4
2249 Male, age 74, both hemispheres 43.7
1940 Female, age 85, left hemisphere 30.8
2113 Female, age 91, right hemisphere 16.4
2437 Female, age 94, left hemisphere 12.1
1892 Male, age 76, both hemispheres 11.7
1963 Male, age 80, left hemisphere 8.0
Hippocampus, CA3
nTPM: 11.8
1867 Male, age 76, both hemispheres 24.6
2436 Male, age 74, both hemispheres 15.0
2137 Male, age 80, left hemisphere 8.6
2620 Female, age 94, left hemisphere 8.6
1891 Female, age 85, both hemispheres 7.2
2861 Female, age 67, both hemispheres 6.8
Parahippocampal cortex
nTPM: 7.8
2018 Male, age 76, both hemispheres 20.0
2532 Female, age 72, left hemisphere 8.9
2250 Female, age 67, right hemisphere 7.7
1990 Female, age 91, right hemisphere 7.5
2245 Female, age 91, both hemispheres 7.2
2622 Female, age 67, right hemisphere 6.6
1850 Male, age 80, both hemispheres 6.5
1933 Female, age 85, both hemispheres 6.2
2693 Female, age 94, both hemispheres 5.0
2692 Male, age 74, both hemispheres 2.5
Perirhinal gyrus
nTPM: 7.4
1841 Female, age 85, right hemisphere 10.7
2521 Female, age 94, right hemisphere 8.2
1794 Male, age 80, right hemisphere 7.8
2848 Male, age 76, right hemisphere 6.4
1847 Female, age 91, left hemisphere 3.9
Subiculum
nTPM: 9.8
2042 Male, age 76, both hemispheres 22.3
2729 Female, age 91, right hemisphere 10.9
1901 Male, age 80, both hemispheres 8.2
2438 Female, age 94, left hemisphere 6.9
2619 Male, age 74, both hemispheres 6.1
1977 Female, age 85, both hemispheres 4.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.7
Samples: 197

Max nTPM: 354.3
Min nTPM: 4.2
Std nTPM: 55.8
Median nTPM: 25.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 354.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 340.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 297.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 281.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 274.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 186.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 178.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 167.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 163.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 157.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 146.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 135.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 134.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 129.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 124.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 123.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 116.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 109.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 93.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 91.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 91.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 90.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 89.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 85.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 83.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 82.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 82.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 82.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 75.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 74.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 74.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 74.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 74.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 73.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 66.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 65.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 64.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 61.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 60.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 58.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 56.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 55.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 55.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 55.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 54.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 53.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 53.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 51.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 50.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 47.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 47.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 47.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 47.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 46.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 46.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 45.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 45.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 45.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 44.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 43.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 42.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 41.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 39.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 36.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 36.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 35.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 35.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 35.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 34.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 34.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 34.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 34.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 33.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 33.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 32.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 32.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 32.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 32.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 31.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 31.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 31.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 31.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 30.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 30.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 29.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 29.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 28.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 28.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 28.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 28.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 27.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 27.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 27.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 27.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 26.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 26.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 26.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 26.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 25.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 25.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 24.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 24.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 24.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 24.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 24.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 24.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 23.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 22.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 22.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 22.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 22.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 22.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 21.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 21.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 21.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 21.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 20.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 20.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 20.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 20.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 20.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 20.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 20.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 20.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 19.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 19.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 19.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 18.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 18.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 18.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 17.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 17.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 17.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 17.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 16.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 16.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 16.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 16.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 16.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 16.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 16.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 16.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 16.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 16.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 15.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 15.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 15.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 15.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 14.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 14.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 14.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 13.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 13.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 13.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 13.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 13.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 12.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 12.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 12.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 11.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 11.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 11.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 11.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 10.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 10.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 10.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 10.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 10.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 10.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 9.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 9.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 9.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 9.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 9.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 9.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 8.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 8.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 8.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 8.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 8.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 8.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 8.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 7.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 7.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 7.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 7.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 7.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 6.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 6.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 6.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 4.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 4.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 4.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.4
FF:10153-102I9 76 years, female 37.6
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.2
Pig sample Sample description nTPM
Subiculum
nTPM: 16.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 9.8
Sample A Female 22.6
Sample B Female 12.6
Sample C Male 9.8
Sample D Male 20.1
Dorsal hippocampus
nTPM: 27.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 16.9
Sample A Female 38.1
Sample B Female 16.9
Sample C Male 34.4
Sample D Male 19.5
Entorhinal cortex
nTPM: 13.8
Samples: 4

Max nTPM: 15.3
Min nTPM: 9.7
Sample A Female 15.3
Sample B Female 15.1
Sample C Male 14.9
Sample D Male 9.7
Ventral hippocampus
nTPM: 20.4
Samples: 4

Max nTPM: 27.9
Min nTPM: 15.3
Sample A Female 27.9
Sample B Female 15.3
Sample C Male 15.9
Sample D Male 22.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.9
Sample A Male 4.9
Sample B Male 5.2
Sample C Female 5.4
Sample D Female 4.9
Hippocampal formation
nTPM: 2.4
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.4
Sample A Male 3.5
Sample B Male 1.4
Sample C Female 1.9
Sample D Female 2.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70813897 Antisense, RP_050725_02_E09, Mouse strain C57BL/6J (56 days, male) 0.3
68191372 Antisense, RP_041129_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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