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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:295.9 nTPM
GTEx:295.9 nTPM
FANTOM5:1076.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029292Antibody HPA071992
Squamous epithelial cells MediumMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 295.9
Samples: 170

Max nTPM: 532.4
Min nTPM: 145.1
Std nTPM: 76.6
Median nTPM: 287.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 532.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 525.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 515.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 494.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 481.8
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 441.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 440.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 439.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 430.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 422.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 414.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 413.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 411.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 403.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 400.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 400.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 398.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 398.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 392.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 384.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 382.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 376.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 375.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 375.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 373.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 370.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 369.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 366.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 358.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 357.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 356.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 356.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 351.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 351.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 351.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 351.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 350.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 349.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 347.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 345.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 344.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 343.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 343.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 343.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 343.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 342.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 342.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 342.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 339.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 339.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 338.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 337.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 335.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 334.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 334.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 329.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 325.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 319.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 317.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 316.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 316.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 313.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 312.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 311.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 308.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 307.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 307.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 306.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 306.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 306.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 306.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 305.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 304.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 301.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 301.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 300.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 300.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 300.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 300.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 296.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 291.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 291.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 291.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 290.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 287.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 287.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 287.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 286.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 283.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 283.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 280.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 278.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 278.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 278.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 278.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 277.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 276.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 275.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 275.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 274.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 274.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 274.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 273.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 272.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 271.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 270.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 270.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 269.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 269.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 266.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 264.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 264.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 263.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 262.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 260.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 258.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 258.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 258.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 257.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 257.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 253.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 252.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 251.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 249.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 248.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 248.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 243.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 242.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 242.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 242.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 241.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 241.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 240.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 240.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 239.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 237.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 237.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 232.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 232.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 231.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 224.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 224.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 224.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 222.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 220.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 218.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 214.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 213.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 213.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 213.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 210.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 207.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 200.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 200.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 192.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 183.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 183.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 182.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 171.1
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 170.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 170.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 169.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 168.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 167.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 165.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 163.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 158.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 156.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 147.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 145.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1076.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1076.2
FF:10204-103F6 68 years, female 1076.2

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