We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BIN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BIN1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:197.8 nTPM
HPA Brain:200.9 nTPM
GTEx:197.8 nTPM
FANTOM5:182.4 Scaled Tags Per Million
Pig:262.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 168.9
2194 Female, age 79, both hemispheres 210.8
1981 Female, age 72, midline 170.0
2565 Male, age 75, midline 167.6
2816 Male, age 47, midline 157.3
2048 Male, age 55, midline 138.6
Cervical spinal cord, dorsal horn
nTPM: 197.0
2069 Male, age 47, both hemispheres 222.4
2297 Male, age 75, both hemispheres 216.5
1877 Male, age 55, unknown 204.3
2173 Female, age 72, unknown 201.8
2296 Male, age 66, both hemispheres 194.8
2721 Male, age 90, both hemispheres 142.5
Cervical spinal cord, ventral horn
nTPM: 200.9
2480 Male, age 75, both hemispheres 232.3
2068 Male, age 55, unknown 231.9
2820 Female, age 79, both hemispheres 227.4
2809 Male, age 90, both hemispheres 196.7
2295 Male, age 66, both hemispheres 178.5
2098 Female, age 72, unknown 138.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 197.8
Samples: 204

Max nTPM: 467.2
Min nTPM: 99.8
Std nTPM: 55.2
Median nTPM: 187.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 467.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 369.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 368.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 363.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 353.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 351.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 331.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 311.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 293.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 284.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 279.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 274.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 274.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 274.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 274.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 273.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 272.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 268.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 267.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 266.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 264.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 262.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 260.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 256.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 256.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 256.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 255.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 255.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 254.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 254.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 251.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 251.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 250.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 249.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 249.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 248.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 247.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 246.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 246.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 245.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 244.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 241.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 240.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 239.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 237.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 234.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 231.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 231.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 231.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 231.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 230.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 229.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 229.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 226.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 226.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 226.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 224.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 222.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 220.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 219.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 219.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 217.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 217.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 216.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 216.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 216.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 215.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 215.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 214.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 213.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 213.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 211.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 211.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 209.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 209.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 206.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 205.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 205.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 204.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 202.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 202.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 202.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 199.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 199.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 199.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 198.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 195.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 195.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 194.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 194.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 194.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 194.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 193.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 192.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 192.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 190.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 190.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 189.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 189.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 188.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 188.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 187.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 185.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 185.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 182.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 182.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 182.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 182.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 182.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 182.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 181.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 180.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 179.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 178.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 178.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 177.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 177.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 177.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 176.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 175.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 175.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 174.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 173.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 171.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 170.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 170.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 169.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 169.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 169.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 168.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 168.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 167.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 167.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 167.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 166.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 166.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 166.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 166.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 166.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 166.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 165.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 165.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 164.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 161.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 161.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 161.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 160.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 160.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 160.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 159.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 159.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 157.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 157.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 157.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 157.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 157.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 156.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 155.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 154.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 153.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 153.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 151.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 151.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 145.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 145.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 144.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 143.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 142.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 142.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 141.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 140.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 140.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 138.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 137.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 137.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 136.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 135.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 130.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 128.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 128.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 125.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 125.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 121.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 120.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 117.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 116.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 114.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

182.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 182.4
FF:10181-103D1 60 years, female 210.3
FF:10159-103A6 76 years, female 154.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 233.1
Samples: 4

Max nTPM: 261.7
Min nTPM: 186.8
Sample A Female 258.5
Sample B Female 225.5
Sample C Male 186.8
Sample D Male 261.7
Ventral spinal cord
nTPM: 262.6
Samples: 4

Max nTPM: 296.8
Min nTPM: 241.6
Sample A Female 255.2
Sample B Female 256.7
Sample C Male 241.6
Sample D Male 296.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo