MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA Brain:48.6 nTPM
GTEx:27.2 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:62.1 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.5
2586 Male, age 75, left hemisphere 51.5
2666 Male, age 74, left hemisphere 45.3
1827 Male, age 72, unknown 45.2
1870 Female, age 42, unknown 44.6
2828 Female, age 72, unknown 44.6
1833 Male, age 53, unknown 42.3
1830 Male, age 51, unknown 38.3
2411 Female, age 72, unknown 36.6
2219 Male, age 76, both hemispheres 36.5
2019 Male, age 18, unknown 30.3
Dorsal raphe nucleus
nTPM: 45.8
2047 Male, age 72, unknown 48.2
2016 Female, age 72, unknown 48.0
1828 Male, age 53, unknown 47.5
2298 Female, age 72, unknown 45.1
2750 Male, age 76, both hemispheres 40.3
Inferior colliculus
nTPM: 44.6
2849 Male, age 72, unknown 48.3
1848 Female, age 42, unknown 47.0
2097 Female, age 72, unknown 41.8
1890 Male, age 53, unknown 41.4
Median raphe nucleus
nTPM: 47.2
2220 Male, age 76, midline 47.2
Periaquaductal grey, anterior
nTPM: 44.3
1947 Male, age 18, unknown 50.8
1795 Male, age 51, unknown 44.2
2502 Female, age 75, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 47.2
2850 Male, age 76, both hemispheres 53.2
1840 Male, age 53, unknown 50.6
2464 Female, age 72, unknown 43.2
1831 Male, age 72, unknown 41.9
Periaquaductal grey, lateral
nTPM: 44.1
2053 Male, age 18, unknown 47.6
2140 Male, age 76, both hemispheres 46.0
2272 Male, age 74, both hemispheres 38.8
Pretectal area
nTPM: 45.4
2667 Female, age 75, unknown 50.4
1816 Male, age 51, unknown 48.5
2224 Female, age 72, unknown 47.7
2825 Male, age 18, unknown 47.7
1817 Female, age 42, unknown 47.5
1944 Female, age 72, unknown 47.5
1815 Male, age 53, unknown 46.1
2273 Male, age 74, both hemispheres 43.7
2407 Male, age 75, both hemispheres 43.3
2007 Male, age 72, unknown 39.9
2316 Male, age 76, right hemisphere 37.1
Red nucleus
nTPM: 39.6
1821 Female, age 72, unknown 45.3
2725 Female, age 75, unknown 45.3
1954 Female, age 42, unknown 44.4
2503 Female, age 72, unknown 41.5
1865 Male, age 51, unknown 41.4
1904 Male, age 53, unknown 39.7
2227 Male, age 72, unknown 38.5
2584 Male, age 75, left hemisphere 38.5
2823 Male, age 76, right hemisphere 37.1
2769 Male, age 72, unknown 36.8
2588 Male, age 74, left hemisphere 36.6
2785 Male, age 18, unknown 29.9
Substantia nigra
nTPM: 48.6
2699 Male, age 18, unknown 60.5
1916 Female, age 42, unknown 52.9
2409 Female, age 72, unknown 51.5
2241 Male, age 72, unknown 49.7
2665 Male, age 74, both hemispheres 49.2
2583 Male, age 75, right hemisphere 48.9
1851 Male, age 51, unknown 46.9
1889 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 42.1
1941 Male, age 53, unknown 39.0
Superior colliculus
nTPM: 42.7
1796 Male, age 53, unknown 47.3
2261 Male, age 18, unknown 45.8
1995 Male, age 72, unknown 45.6
2087 Female, age 72, unknown 44.5
2668 Female, age 75, unknown 44.2
1913 Female, age 42, unknown 43.1
1839 Male, age 51, unknown 42.9
2664 Male, age 75, both hemispheres 41.6
2587 Male, age 74, left hemisphere 40.9
1895 Male, age 76, right hemisphere 31.5
Ventral tegmental area
nTPM: 43.7
2223 Female, age 72, unknown 46.7
1915 Female, age 42, unknown 44.3
2021 Male, age 53, unknown 44.3
2410 Female, age 72, unknown 42.5
2218 Male, age 76, both hemispheres 42.4
1942 Male, age 51, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.2
Samples: 139

Max nTPM: 60.6
Min nTPM: 12.5
Std nTPM: 8.6
Median nTPM: 25.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 60.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 57.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 49.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 48.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 42.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 42.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 40.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 40.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.4
Samples: 4

Max nTPM: 41.0
Min nTPM: 36.2
Sample A Female 41.0
Sample B Female 36.2
Sample C Male 40.0
Sample D Male 36.2
Midbrain
nTPM: 40.4
Samples: 4

Max nTPM: 43.4
Min nTPM: 36.0
Sample A Female 43.4
Sample B Female 40.9
Sample C Male 41.3
Sample D Male 36.0
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 40.8
Min nTPM: 34.9
Sample B Female 37.6
Sample C Male 40.8
Sample D Male 34.9
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 38.0
Min nTPM: 31.1
Sample A Female 37.8
Sample B Female 31.1
Sample C Male 36.4
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 65.5
Min nTPM: 60.1
Sample A Male 62.2
Sample B Male 60.1
Sample C Female 65.5
Sample D Female 60.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
532610 Antisense, RP_040810_02_E08, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org