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  • TMBIM6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:293.2 nTPM
HPA Brain:433.5 nTPM
GTEx:293.2 nTPM
FANTOM5:630.4 Scaled Tags Per Million
Pig:351.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 417.3
1981 Female, age 72, midline 474.0
2048 Male, age 55, midline 438.6
2565 Male, age 75, midline 416.2
2816 Male, age 47, midline 389.1
2194 Female, age 79, both hemispheres 368.3
Cervical spinal cord, dorsal horn
nTPM: 433.5
2296 Male, age 66, both hemispheres 518.0
2173 Female, age 72, unknown 512.6
2069 Male, age 47, both hemispheres 465.6
2297 Male, age 75, both hemispheres 369.8
1877 Male, age 55, unknown 369.4
2721 Male, age 90, both hemispheres 365.8
Cervical spinal cord, ventral horn
nTPM: 416.2
2098 Female, age 72, unknown 537.4
2809 Male, age 90, both hemispheres 447.8
2480 Male, age 75, both hemispheres 415.2
2295 Male, age 66, both hemispheres 409.0
2068 Male, age 55, unknown 344.0
2820 Female, age 79, both hemispheres 343.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 293.2
Samples: 204

Max nTPM: 430.7
Min nTPM: 156.9
Std nTPM: 55.2
Median nTPM: 294.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 430.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 422.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 420.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 405.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 403.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 401.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 396.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 395.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 393.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 389.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 389.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 385.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 383.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 377.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 371.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 367.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 366.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 366.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 366.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 364.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 363.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 363.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 362.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 362.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 361.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 360.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 358.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 358.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 356.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 354.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 353.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 352.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 350.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 350.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 349.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 349.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 349.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 346.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 345.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 345.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 342.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 340.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 339.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 339.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 338.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 336.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 336.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 335.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 335.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 333.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 333.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 333.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 332.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 331.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 331.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 329.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 329.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 329.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 328.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 326.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 326.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 326.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 324.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 323.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 323.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 320.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 318.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 318.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 317.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 314.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 312.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 312.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 311.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 310.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 309.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 309.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 308.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 307.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 307.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 306.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 306.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 306.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 304.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 304.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 304.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 303.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 303.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 302.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 302.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 301.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 301.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 300.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 300.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 300.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 299.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 299.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 299.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 297.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 297.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 296.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 295.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 295.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 294.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 293.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 292.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 292.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 292.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 290.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 289.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 288.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 288.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 287.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 287.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 286.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 286.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 286.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 284.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 283.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 281.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 279.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 278.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 278.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 277.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 275.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 275.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 275.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 274.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 273.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 271.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 271.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 270.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 269.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 269.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 268.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 264.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 263.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 263.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 262.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 262.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 261.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 258.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 258.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 258.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 256.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 255.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 253.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 253.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 253.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 253.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 252.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 252.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 252.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 248.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 248.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 248.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 247.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 246.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 245.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 244.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 244.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 244.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 242.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 242.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 241.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 239.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 239.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 239.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 238.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 237.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 237.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 237.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 236.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 235.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 235.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 235.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 234.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 234.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 233.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 231.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 229.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 229.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 227.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 226.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 224.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 223.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 218.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 215.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 214.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 213.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 212.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 211.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 207.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 205.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 197.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 191.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 188.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 178.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 175.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 170.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 162.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 156.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

630.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 630.4
FF:10159-103A6 76 years, female 752.2
FF:10181-103D1 60 years, female 508.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 311.7
Samples: 4

Max nTPM: 334.6
Min nTPM: 288.3
Sample A Female 288.3
Sample B Female 334.6
Sample C Male 325.5
Sample D Male 298.4
Ventral spinal cord
nTPM: 351.1
Samples: 4

Max nTPM: 368.5
Min nTPM: 331.4
Sample A Female 352.1
Sample B Female 352.4
Sample C Male 331.4
Sample D Male 368.5

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