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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:295.4 nTPM
HPA Brain:240.9 nTPM
GTEx:295.4 nTPM
FANTOM5:241.3 Scaled Tags Per Million
Pig:160.2 nTPM
Mouse:383.0 nTPM
Allen mouse:29.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.9
Sample id Sample description nTPM
Amygdala
nTPM: 240.9
2514 Male, age 75, right hemisphere 276.8
2695 Female, age 67, right hemisphere 251.1
1987 Female, age 91, left hemisphere 239.8
2814 Male, age 76, right hemisphere 232.7
2517 Female, age 94, left hemisphere 204.0
Basal amygdala
nTPM: 192.1
2609 Male, age 75, right hemisphere 281.3
2243 Female, age 91, right hemisphere 203.8
1955 Male, age 76, both hemispheres 203.4
2110 Male, age 80, left hemisphere 194.8
2685 Female, age 94, left hemisphere 168.9
2827 Female, age 67, right hemisphere 100.4
Central amygdala
nTPM: 210.9
2515 Male, age 75, right hemisphere 283.9
1905 Male, age 76, both hemispheres 207.4
2239 Male, age 80, left hemisphere 190.5
2701 Female, age 91, right hemisphere 188.7
2826 Female, age 94, left hemisphere 183.8
Corticomedial amygdala
nTPM: 209.9
2428 Male, age 75, right hemisphere 296.5
2829 Male, age 80, left hemisphere 234.1
2242 Female, age 91, right hemisphere 219.2
2240 Male, age 76, both hemispheres 204.6
2429 Female, age 94, left hemisphere 192.9
2535 Female, age 67, right hemisphere 112.0
Lateral amygdala
nTPM: 183.0
2516 Male, age 75, right hemisphere 263.1
1883 Male, age 76, both hemispheres 207.4
2256 Male, age 80, left hemisphere 179.0
2534 Female, age 94, left hemisphere 169.0
2255 Female, age 91, right hemisphere 159.8
2830 Female, age 67, right hemisphere 119.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 295.4
Samples: 181

Max nTPM: 606.7
Min nTPM: 132.4
Std nTPM: 73.5
Median nTPM: 292.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 606.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 521.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 500.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 463.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 450.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 444.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 443.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 443.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 442.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 438.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 437.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 414.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 413.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 411.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 408.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 399.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 396.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 392.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 389.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 383.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 376.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 375.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 362.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 357.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 355.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 353.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 350.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 350.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 349.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 349.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 347.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 346.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 345.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 343.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 342.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 342.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 342.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 341.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 341.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 341.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 341.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 338.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 337.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 335.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 334.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 333.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 332.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 332.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 331.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 331.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 330.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 329.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 328.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 328.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 326.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 325.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 322.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 322.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 322.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 320.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 319.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 318.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 317.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 315.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 314.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 314.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 312.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 310.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 309.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 309.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 307.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 306.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 305.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 304.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 303.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 303.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 303.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 301.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 301.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 300.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 299.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 297.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 297.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 296.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 296.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 295.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 294.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 294.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 293.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 293.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 292.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 292.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 291.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 291.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 289.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 289.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 287.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 287.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 284.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 284.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 284.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 283.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 283.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 282.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 281.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 280.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 280.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 280.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 276.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 274.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 273.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 273.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 272.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 271.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 271.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 271.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 271.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 270.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 269.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 267.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 266.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 266.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 262.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 262.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 258.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 257.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 257.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 256.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 256.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 256.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 255.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 254.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 253.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 253.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 251.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 251.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 249.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 249.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 249.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 246.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 244.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 242.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 238.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 236.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 235.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 235.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 234.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 234.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 229.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 224.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 223.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 222.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 221.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 219.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 219.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 217.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 215.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 213.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 208.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 208.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 204.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 204.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 201.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 200.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 200.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 197.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 194.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 194.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 191.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 188.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 188.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 188.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 184.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 171.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 151.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 142.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 141.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 132.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.3
FF:10151-102I7 76 years, female 241.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.2
Pig sample Sample description nTPM
Amygdala
nTPM: 160.2
Samples: 4

Max nTPM: 207.3
Min nTPM: 138.8
Sample A Female 207.3
Sample B Female 149.0
Sample C Male 138.8
Sample D Male 145.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 383.0
Samples: 4

Max nTPM: 391.7
Min nTPM: 375.5
Sample A Male 391.7
Sample B Male 375.5
Sample C Female 383.8
Sample D Female 381.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

29.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.1
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 29.1

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