HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:91.8 nTPM
GTEx:23.2 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:62.1 nTPM
Mouse:21.4 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052625Antibody CAB004300Antibody CAB004674
Glial cells MediumNot detectedMedium
Neuronal cells LowNot detectedMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 91.8
Sample id Sample description nTPM
Hippocampus
nTPM: 91.8
2529 Female, age 94, left hemisphere 107.4
2621 Female, age 67, right hemisphere 98.7
2148 Female, age 91, left hemisphere 95.6
1898 Male, age 80, left hemisphere 89.1
1911 Female, age 85, right hemisphere 82.7
1855 Male, age 76, left hemisphere 77.1
Dentate gyrus
nTPM: 88.9
2530 Female, age 94, left hemisphere 119.5
2528 Male, age 74, both hemispheres 92.3
2531 Female, age 67, both hemispheres 86.0
2010 Male, age 76, both hemispheres 82.7
2246 Female, age 85, both hemispheres 81.6
1927 Female, age 91, both hemispheres 71.2
Entorhinal gyrus
nTPM: 83.3
2117 Female, age 91, right hemisphere 102.5
2686 Male, age 75, right hemisphere 87.4
2613 Female, age 94, left hemisphere 86.2
2764 Male, age 80, right hemisphere 83.7
1787 Male, age 76, left hemisphere 73.5
1938 Female, age 85, left hemisphere 66.4
Hippocampus, CA1
nTPM: 76.2
2527 Male, age 74, both hemispheres 90.8
1873 Female, age 85, both hemispheres 82.2
2749 Male, age 80, left hemisphere 79.4
2082 Female, age 91, right hemisphere 77.6
2045 Male, age 76, both hemispheres 50.8
Hippocampus, CA2
nTPM: 87.3
1963 Male, age 80, left hemisphere 126.8
2437 Female, age 94, left hemisphere 95.3
2113 Female, age 91, right hemisphere 80.0
2249 Male, age 74, both hemispheres 79.4
1940 Female, age 85, left hemisphere 78.9
1892 Male, age 76, both hemispheres 63.1
Hippocampus, CA3
nTPM: 79.9
2861 Female, age 67, both hemispheres 105.7
2620 Female, age 94, left hemisphere 83.1
2436 Male, age 74, both hemispheres 81.4
1891 Female, age 85, both hemispheres 75.2
2137 Male, age 80, left hemisphere 70.5
1867 Male, age 76, both hemispheres 63.6
Parahippocampal cortex
nTPM: 77.2
2245 Female, age 91, both hemispheres 95.5
2692 Male, age 74, both hemispheres 91.4
2622 Female, age 67, right hemisphere 90.2
2532 Female, age 72, left hemisphere 88.9
1990 Female, age 91, right hemisphere 76.1
2018 Male, age 76, both hemispheres 71.5
2250 Female, age 67, right hemisphere 70.0
1933 Female, age 85, both hemispheres 63.6
1850 Male, age 80, both hemispheres 63.1
2693 Female, age 94, both hemispheres 61.2
Perirhinal gyrus
nTPM: 59.0
1794 Male, age 80, right hemisphere 71.0
2521 Female, age 94, right hemisphere 65.3
1841 Female, age 85, right hemisphere 56.8
1847 Female, age 91, left hemisphere 51.2
2848 Male, age 76, right hemisphere 51.0
Subiculum
nTPM: 87.7
2042 Male, age 76, both hemispheres 99.6
2438 Female, age 94, left hemisphere 93.1
2619 Male, age 74, both hemispheres 91.6
2729 Female, age 91, right hemisphere 85.1
1901 Male, age 80, both hemispheres 84.5
1977 Female, age 85, both hemispheres 72.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.2
Samples: 197

Max nTPM: 45.7
Min nTPM: 11.5
Std nTPM: 5.5
Median nTPM: 22.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 45.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 37.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 36.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 35.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 34.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 34.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 34.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 33.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 33.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 33.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.9
FF:10153-102I9 76 years, female 84.3
FF:10169-103B7 60 years, female 41.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 62.1
Pig sample Sample description nTPM
Subiculum
nTPM: 44.2
Samples: 4

Max nTPM: 50.7
Min nTPM: 37.0
Sample A Female 50.7
Sample B Female 37.0
Sample C Male 44.4
Sample D Male 44.7
Dorsal hippocampus
nTPM: 62.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 48.6
Sample A Female 70.4
Sample B Female 62.1
Sample C Male 67.1
Sample D Male 48.6
Entorhinal cortex
nTPM: 52.1
Samples: 4

Max nTPM: 57.4
Min nTPM: 47.7
Sample A Female 57.4
Sample B Female 51.9
Sample C Male 51.4
Sample D Male 47.7
Ventral hippocampus
nTPM: 57.5
Samples: 4

Max nTPM: 70.4
Min nTPM: 39.2
Sample A Female 50.4
Sample B Female 39.2
Sample C Male 70.4
Sample D Male 69.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 26.6
Min nTPM: 16.6
Sample A Male 26.6
Sample B Male 24.6
Sample C Female 16.6
Sample D Female 17.9
Hippocampal formation
nTPM: 16.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 17.6
Sample C Female 16.4
Sample D Female 18.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
70593313 Antisense, RP_050407_03_C12, Mouse strain C57BL/6J (56 days, male) 3.1
74988734 Antisense, RP_060315_04_B02, Mouse strain C57BL/6J (56 days, male) 2.0

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