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  • LY6E
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:168.5 nTPM
HPA Brain:49.7 nTPM
GTEx:168.5 nTPM
FANTOM5:72.1 Scaled Tags Per Million
Pig:227.7 nTPM
Mouse:149.5 nTPM
Allen mouse:15.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.7
Sample id Sample description nTPM
Amygdala
nTPM: 39.8
2695 Female, age 67, right hemisphere 62.7
2517 Female, age 94, left hemisphere 39.8
2814 Male, age 76, right hemisphere 39.4
1987 Female, age 91, left hemisphere 32.9
2514 Male, age 75, right hemisphere 24.3
Basal amygdala
nTPM: 43.4
2243 Female, age 91, right hemisphere 49.6
2827 Female, age 67, right hemisphere 49.5
2110 Male, age 80, left hemisphere 44.9
2685 Female, age 94, left hemisphere 42.1
1955 Male, age 76, both hemispheres 41.7
2609 Male, age 75, right hemisphere 32.7
Central amygdala
nTPM: 49.2
2826 Female, age 94, left hemisphere 86.6
2239 Male, age 80, left hemisphere 48.5
2701 Female, age 91, right hemisphere 44.0
2515 Male, age 75, right hemisphere 34.7
1905 Male, age 76, both hemispheres 32.2
Corticomedial amygdala
nTPM: 45.4
2829 Male, age 80, left hemisphere 60.9
2242 Female, age 91, right hemisphere 50.7
2535 Female, age 67, right hemisphere 46.9
2428 Male, age 75, right hemisphere 43.9
2240 Male, age 76, both hemispheres 36.0
2429 Female, age 94, left hemisphere 33.8
Lateral amygdala
nTPM: 49.7
2830 Female, age 67, right hemisphere 81.4
2534 Female, age 94, left hemisphere 61.7
2516 Male, age 75, right hemisphere 43.4
2256 Male, age 80, left hemisphere 39.3
1883 Male, age 76, both hemispheres 37.3
2255 Female, age 91, right hemisphere 35.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.5
Samples: 181

Max nTPM: 504.9
Min nTPM: 71.3
Std nTPM: 61.6
Median nTPM: 156.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 504.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 366.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 348.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 336.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 322.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 309.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 289.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 282.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 280.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 270.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 270.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 269.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 266.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 265.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 259.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 253.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 250.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 247.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 246.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 246.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 242.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 239.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 239.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 239.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 235.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 234.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 232.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 229.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 226.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 225.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 223.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 222.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 221.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 217.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 215.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 211.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 210.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 209.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 209.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 207.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 206.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 200.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 199.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 197.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 197.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 197.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 194.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 191.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 190.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 190.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 189.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 182.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 181.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 181.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 179.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 177.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 176.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 173.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 173.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 173.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 172.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 171.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 171.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 170.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 169.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 169.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 168.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 167.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 166.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 166.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 166.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 166.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 163.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 162.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 160.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 159.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 158.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 158.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 158.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 158.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 158.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 156.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 155.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 155.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 153.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 153.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 152.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 152.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 148.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 147.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 147.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 146.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 145.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 144.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 143.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 142.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 141.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 141.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 140.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 140.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 140.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 136.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 136.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 135.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 134.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 132.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 132.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 130.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 130.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 130.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 129.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 129.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 127.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 126.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 126.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 124.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 122.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 122.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 121.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 118.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 114.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 113.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 113.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 112.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 111.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 110.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 110.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 108.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 108.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 106.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 106.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 105.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 105.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 104.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 103.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 102.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 91.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 90.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 90.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 88.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 72.1
FF:10151-102I7 76 years, female 72.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.7
Pig sample Sample description nTPM
Amygdala
nTPM: 227.7
Samples: 4

Max nTPM: 380.0
Min nTPM: 132.1
Sample A Female 380.0
Sample B Female 132.1
Sample C Male 164.0
Sample D Male 234.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 149.5
Samples: 4

Max nTPM: 181.0
Min nTPM: 131.3
Sample A Male 135.0
Sample B Male 131.3
Sample C Female 181.0
Sample D Female 150.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.9
77454976 Antisense, RP_070129_01_E08, Mouse strain C57BL/6J (56 days, male) 16.6
79587728 Antisense, RP_071204_02_D10, Mouse strain C57BL/6J (56 days, male) 15.3

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