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  • VPS28
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:140.7 nTPM
HPA Brain:0.4 nTPM
GTEx:140.7 nTPM
FANTOM5:44.8 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:215.3 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Sample id Sample description nTPM
Amygdala
nTPM: 0.4
2514 Male, age 75, right hemisphere 1.5
2517 Female, age 94, left hemisphere 0.4
1987 Female, age 91, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 0.1
1955 Male, age 76, both hemispheres 0.4
2609 Male, age 75, right hemisphere 0.3
2110 Male, age 80, left hemisphere 0.1
2243 Female, age 91, right hemisphere 0.0
2685 Female, age 94, left hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 0.0
1905 Male, age 76, both hemispheres 0.1
2239 Male, age 80, left hemisphere 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 0.4
2535 Female, age 67, right hemisphere 1.8
2242 Female, age 91, right hemisphere 0.4
2429 Female, age 94, left hemisphere 0.3
2240 Male, age 76, both hemispheres 0.0
2428 Male, age 75, right hemisphere 0.0
2829 Male, age 80, left hemisphere 0.0
Lateral amygdala
nTPM: 0.2
2830 Female, age 67, right hemisphere 0.8
2256 Male, age 80, left hemisphere 0.4
2516 Male, age 75, right hemisphere 0.2
1883 Male, age 76, both hemispheres 0.0
2255 Female, age 91, right hemisphere 0.0
2534 Female, age 94, left hemisphere 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 140.7
Samples: 181

Max nTPM: 305.3
Min nTPM: 87.3
Std nTPM: 33.5
Median nTPM: 133.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 305.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 288.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 257.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 249.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 241.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 220.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 204.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 196.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 192.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 190.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 189.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 189.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 189.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 186.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 186.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 185.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 183.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 183.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 181.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 181.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 179.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 178.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 177.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 177.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 176.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 175.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 170.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 168.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 167.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 166.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 164.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 163.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 161.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 160.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 160.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 158.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 156.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 156.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 154.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 154.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 154.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 152.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 151.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 149.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 148.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 148.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 148.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 148.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 147.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 145.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 144.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 143.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 142.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 142.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 141.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 141.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 141.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 141.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 141.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 141.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 140.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 139.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 138.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 137.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 135.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 134.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 134.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 133.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 133.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 133.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 133.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 133.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 132.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 132.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 132.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 132.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 131.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 130.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 130.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 129.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 129.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 128.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 128.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 128.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 128.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 128.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 128.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 127.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 127.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 126.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 125.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 125.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 125.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 124.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 124.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 123.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 123.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 122.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 121.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 121.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 120.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 120.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 120.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 119.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 119.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 119.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 118.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 117.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 117.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 114.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 113.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 112.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 112.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 111.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 110.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 109.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 107.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 107.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 104.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 103.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 102.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 98.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 94.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 90.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 87.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.8
FF:10151-102I7 76 years, female 44.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.2
Pig sample Sample description nTPM
Amygdala
nTPM: 30.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 24.7
Sample A Female 38.4
Sample B Female 24.7
Sample C Male 28.5
Sample D Male 29.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.3
Samples: 4

Max nTPM: 221.4
Min nTPM: 208.1
Sample A Male 220.7
Sample B Male 221.4
Sample C Female 208.1
Sample D Female 210.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
68321662 Antisense, RP_041130_02_H03, Mouse strain C57BL/6J (56 days, male) 9.7

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