We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CAMK2N1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CAMK2N1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:184.4 nTPM
FANTOM5:471.5 Scaled Tags Per Million
Pig:418.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA075200
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 184.4
Samples: 300

Max nTPM: 676.9
Min nTPM: 42.5
Std nTPM: 91.5
Median nTPM: 169.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 676.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 654.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 565.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 494.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 404.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 401.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 394.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 372.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 372.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 368.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 358.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 355.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 351.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 343.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 341.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 339.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 337.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 333.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 330.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 328.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 323.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 317.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 311.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 311.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 307.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 303.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 303.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 301.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 301.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 301.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 298.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 296.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 296.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 290.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 287.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 285.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 282.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 282.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 279.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 279.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 278.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 274.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 271.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 271.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 265.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 264.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 262.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 261.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 261.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 260.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 259.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 258.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 255.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 255.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 254.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 254.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 252.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 251.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 250.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 248.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 248.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 246.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 246.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 244.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 242.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 239.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 238.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 238.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 238.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 237.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 236.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 235.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 235.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 234.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 234.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 233.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 231.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 231.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 230.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 230.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 227.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 226.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 223.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 223.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 223.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 221.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 221.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 221.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 220.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 217.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 217.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 216.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 216.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 215.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 215.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 214.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 213.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 212.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 211.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 209.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 209.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 208.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 206.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 205.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 205.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 205.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 204.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 203.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 202.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 201.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 200.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 199.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 198.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 197.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 196.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 196.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 195.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 195.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 195.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 194.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 194.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 193.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 193.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 192.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 190.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 190.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 189.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 188.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 187.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 185.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 185.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 185.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 184.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 184.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 183.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 183.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 183.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 179.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 179.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 178.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 175.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 175.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 175.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 174.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 173.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 173.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 173.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 172.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 171.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 170.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 168.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 168.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 167.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 166.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 166.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 166.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 165.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 165.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 164.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 163.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 163.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 161.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 160.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 160.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 158.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 158.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 158.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 158.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 157.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 155.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 152.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 151.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 149.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 149.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 148.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 147.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 147.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 146.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 146.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 146.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 146.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 145.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 144.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 144.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 142.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 142.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 142.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 140.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 139.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 138.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 138.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 137.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 136.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 136.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 135.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 134.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 131.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 131.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 131.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 130.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 129.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 129.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 128.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 128.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 126.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 126.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 126.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 125.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 124.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 123.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 122.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 122.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 122.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 121.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 120.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 120.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 119.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 119.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 119.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 118.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 118.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 117.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 115.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 115.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 115.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 115.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 115.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 114.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 114.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 114.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 113.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 111.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 110.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 110.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 108.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 107.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 107.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 106.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 105.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 105.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 105.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 104.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 103.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 102.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 102.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 102.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 102.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 100.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 100.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 99.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 98.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 97.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 96.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 96.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 93.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 92.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 92.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 91.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 89.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 89.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 89.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 87.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 85.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 85.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 84.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 83.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 80.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 80.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 79.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 79.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 77.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 76.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 76.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 75.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 74.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 73.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 71.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 70.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 67.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 66.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 65.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 62.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 59.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 55.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 55.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 54.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 46.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 45.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 42.5
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

471.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 471.5
FF:10164-103B2 76 years, female 471.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.5
Pig sample Sample description nTPM
Caudate
nTPM: 418.5
Samples: 4

Max nTPM: 532.2
Min nTPM: 324.7
Sample A Female 455.4
Sample B Female 324.7
Sample C Male 532.2
Sample D Male 361.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo