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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:590.5 nTPM
GTEx:590.5 nTPM
FANTOM5:523.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041264Antibody HPA041271
Squamous epithelial cells MediumNot detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

590.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 590.5
Samples: 170

Max nTPM: 6952.5
Min nTPM: 1.5
Std nTPM: 899.7
Median nTPM: 286.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 6952.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 6016.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2958.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2863.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2603.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2413.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2230.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2100.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2040.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1971.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1970.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1967.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1850.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1839.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1600.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1492.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1490.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1455.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1441.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1426.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1412.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1407.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1298.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1270.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1218.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1210.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1183.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1169.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1151.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1126.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1117.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1097.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1088.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1011.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 978.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 976.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 869.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 867.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 861.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 837.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 831.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 760.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 753.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 746.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 743.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 654.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 649.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 606.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 605.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 605.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 592.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 584.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 576.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 533.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 530.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 496.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 491.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 488.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 485.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 485.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 484.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 482.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 480.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 430.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 413.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 406.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 402.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 386.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 373.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 368.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 362.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 352.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 349.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 344.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 339.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 338.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 337.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 330.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 329.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 321.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 320.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 315.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 312.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 304.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 292.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 280.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 274.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 272.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 250.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 248.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 230.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 226.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 218.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 216.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 214.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 213.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 211.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 203.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 201.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 181.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 178.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 178.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 168.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 156.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 154.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 146.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 140.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 140.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 140.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 138.7
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 133.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 131.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 127.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 124.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 121.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 116.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 115.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 111.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 108.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 104.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 101.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 101.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 98.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 97.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 91.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 91.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 85.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 81.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 78.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 78.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 75.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 75.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 72.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 65.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 65.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 57.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 53.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 53.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 50.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 42.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 41.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 35.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 32.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 30.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 30.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 26.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 23.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 22.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 21.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 19.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 18.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 16.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 14.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 10.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 10.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 9.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 9.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 8.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 8.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 8.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 8.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 7.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 6.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 6.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 5.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

523.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 523.3
FF:10204-103F6 68 years, female 523.3

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