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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
311.0
nTPM
HPA Brain:
177.0
nTPM
GTEx:
311.0
nTPM
FANTOM5:
34.8
Scaled Tags Per Million
Pig:
182.3
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
177.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 147.8
1870
Female, age 42, unknown
197.7
2411
Female, age 72, unknown
174.1
1833
Male, age 53, unknown
162.6
2019
Male, age 18, unknown
158.8
1830
Male, age 51, unknown
155.0
2219
Male, age 76, both hemispheres
154.4
2828
Female, age 72, unknown
153.9
1827
Male, age 72, unknown
146.0
2666
Male, age 74, left hemisphere
94.9
2586
Male, age 75, left hemisphere
80.9
Dorsal raphe nucleus nTPM: 177.0
2298
Female, age 72, unknown
214.0
2016
Female, age 72, unknown
194.7
2750
Male, age 76, both hemispheres
187.7
1828
Male, age 53, unknown
158.9
2047
Male, age 72, unknown
129.4
Inferior colliculus nTPM: 162.9
2097
Female, age 72, unknown
197.3
1890
Male, age 53, unknown
163.5
1848
Female, age 42, unknown
160.5
2849
Male, age 72, unknown
130.3
Median raphe nucleus nTPM: 132.5
2220
Male, age 76, midline
132.5
Periaquaductal grey, anterior nTPM: 158.2
2502
Female, age 75, unknown
202.8
1795
Male, age 51, unknown
137.6
1947
Male, age 18, unknown
134.2
Periaquaductal grey, dorsal nTPM: 168.4
2850
Male, age 76, both hemispheres
174.5
1831
Male, age 72, unknown
167.4
1840
Male, age 53, unknown
166.3
2464
Female, age 72, unknown
165.5
Periaquaductal grey, lateral nTPM: 171.5
2272
Male, age 74, both hemispheres
189.7
2053
Male, age 18, unknown
166.1
2140
Male, age 76, both hemispheres
158.6
Pretectal area nTPM: 167.2
2273
Male, age 74, both hemispheres
220.1
2224
Female, age 72, unknown
202.1
2316
Male, age 76, right hemisphere
191.6
2667
Female, age 75, unknown
177.7
1815
Male, age 53, unknown
162.0
1944
Female, age 72, unknown
156.2
1817
Female, age 42, unknown
154.8
2825
Male, age 18, unknown
152.0
1816
Male, age 51, unknown
146.3
2007
Male, age 72, unknown
144.8
2407
Male, age 75, both hemispheres
131.2
Red nucleus nTPM: 173.4
1904
Male, age 53, unknown
205.5
2227
Male, age 72, unknown
202.1
2503
Female, age 72, unknown
198.5
1821
Female, age 72, unknown
197.2
1954
Female, age 42, unknown
193.8
2823
Male, age 76, right hemisphere
192.4
2769
Male, age 72, unknown
190.8
1865
Male, age 51, unknown
185.9
2785
Male, age 18, unknown
178.3
2725
Female, age 75, unknown
135.3
2584
Male, age 75, left hemisphere
101.2
2588
Male, age 74, left hemisphere
100.4
Substantia nigra nTPM: 139.9
1889
Female, age 72, unknown
161.7
1851
Male, age 51, unknown
158.1
2699
Male, age 18, unknown
157.2
2409
Female, age 72, unknown
153.0
2241
Male, age 72, unknown
142.5
2590
Female, age 75, unknown
140.9
1916
Female, age 42, unknown
133.3
2665
Male, age 74, both hemispheres
124.6
1941
Male, age 53, unknown
119.1
2583
Male, age 75, right hemisphere
108.6
Superior colliculus nTPM: 162.3
1995
Male, age 72, unknown
214.8
1913
Female, age 42, unknown
213.8
2587
Male, age 74, left hemisphere
175.1
1895
Male, age 76, right hemisphere
165.2
2261
Male, age 18, unknown
155.6
1839
Male, age 51, unknown
153.0
2087
Female, age 72, unknown
151.9
1796
Male, age 53, unknown
148.3
2668
Female, age 75, unknown
139.2
2664
Male, age 75, both hemispheres
106.3
Ventral tegmental area nTPM: 153.5
2223
Female, age 72, unknown
160.3
2218
Male, age 76, both hemispheres
158.9
2021
Male, age 53, unknown
155.1
2410
Female, age 72, unknown
150.2
1942
Male, age 51, unknown
150.0
1915
Female, age 42, unknown
146.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
311.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 311.0
Samples: 139
Max nTPM: 645.4
Min nTPM: 125.3
Std nTPM: 84.1
Median nTPM: 308.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
645.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
514.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
514.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
502.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
484.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
458.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
457.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
436.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
436.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
434.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
429.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
426.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
426.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
418.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
407.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
407.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
406.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
398.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
396.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
387.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
386.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
386.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
385.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
385.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
385.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
384.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
383.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
380.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
374.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
374.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
371.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
367.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
360.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
360.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
360.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
359.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
357.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
357.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
355.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
353.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
350.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
350.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
350.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
348.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
347.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
343.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
342.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
339.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
337.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
336.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
336.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
333.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
331.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
329.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
327.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
327.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
326.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
326.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
323.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
322.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
321.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
318.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
317.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
316.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
315.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
313.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
311.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
310.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
310.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
308.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
308.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
308.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
308.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
305.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
303.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
302.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
302.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
302.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
301.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
301.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
300.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
296.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
295.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
292.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
289.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
287.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
287.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
286.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
286.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
281.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
276.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
273.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
271.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
268.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
265.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
265.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
265.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
262.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
261.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
260.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
258.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
257.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
250.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
249.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
247.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
247.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
247.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
246.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
245.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
242.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
240.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
237.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
236.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
236.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
229.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
225.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
223.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
222.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
221.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
220.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
219.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
217.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
216.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
212.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
209.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
200.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
198.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
195.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
189.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
186.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
179.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
179.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
177.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
176.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
173.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
173.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
164.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
134.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
125.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.