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  • IGFBP7
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.6 nTPM
HPA Brain:124.9 nTPM
GTEx:128.6 nTPM
FANTOM5:232.4 Scaled Tags Per Million
Pig:65.5 nTPM
Mouse:27.9 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.9
Sample id Sample description nTPM
Amygdala
nTPM: 124.9
2695 Female, age 67, right hemisphere 163.1
2814 Male, age 76, right hemisphere 162.3
1987 Female, age 91, left hemisphere 125.3
2517 Female, age 94, left hemisphere 93.7
2514 Male, age 75, right hemisphere 79.9
Basal amygdala
nTPM: 91.2
1955 Male, age 76, both hemispheres 131.1
2110 Male, age 80, left hemisphere 118.5
2827 Female, age 67, right hemisphere 104.9
2609 Male, age 75, right hemisphere 73.6
2685 Female, age 94, left hemisphere 60.6
2243 Female, age 91, right hemisphere 58.5
Central amygdala
nTPM: 124.2
2826 Female, age 94, left hemisphere 170.2
2515 Male, age 75, right hemisphere 148.7
1905 Male, age 76, both hemispheres 133.6
2239 Male, age 80, left hemisphere 96.9
2701 Female, age 91, right hemisphere 71.4
Corticomedial amygdala
nTPM: 78.2
2240 Male, age 76, both hemispheres 90.1
2428 Male, age 75, right hemisphere 83.0
2242 Female, age 91, right hemisphere 82.8
2829 Male, age 80, left hemisphere 82.8
2535 Female, age 67, right hemisphere 75.3
2429 Female, age 94, left hemisphere 55.3
Lateral amygdala
nTPM: 118.8
1883 Male, age 76, both hemispheres 142.9
2830 Female, age 67, right hemisphere 134.7
2256 Male, age 80, left hemisphere 125.8
2534 Female, age 94, left hemisphere 121.6
2255 Female, age 91, right hemisphere 94.8
2516 Male, age 75, right hemisphere 92.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.6
Samples: 181

Max nTPM: 304.8
Min nTPM: 46.3
Std nTPM: 53.0
Median nTPM: 115.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 304.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 295.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 288.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 279.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 276.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 255.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 248.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 242.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 227.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 226.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 224.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 223.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 223.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 223.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 222.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 218.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 212.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 211.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 209.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 202.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 199.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 198.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 193.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 185.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 182.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 176.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 175.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 175.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 174.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 172.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 172.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 171.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 166.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 166.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 162.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 161.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 160.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 158.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 155.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 155.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 155.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 155.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 154.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 151.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 150.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 150.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 149.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 149.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 147.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 147.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 145.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 139.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 139.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 138.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 136.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 136.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 136.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 135.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 134.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 133.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 132.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 127.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 127.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 126.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 126.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 125.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 123.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 122.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 121.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 120.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 117.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 115.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 115.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 111.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 111.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 109.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 109.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 109.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 108.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 108.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 108.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 106.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 106.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 106.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 105.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 104.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 104.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 104.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 102.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 102.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 100.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 100.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 99.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 99.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 99.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 97.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 96.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 95.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 94.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 93.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 92.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 91.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 90.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 90.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 89.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 89.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 89.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 88.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 84.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 84.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 83.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 82.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 80.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 80.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 79.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 76.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 76.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 75.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 74.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 73.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 71.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 67.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 66.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 66.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 64.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 63.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 61.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 60.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 59.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 59.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 58.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 55.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 55.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 53.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 46.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

232.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 232.4
FF:10151-102I7 76 years, female 232.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.5
Pig sample Sample description nTPM
Amygdala
nTPM: 65.5
Samples: 4

Max nTPM: 80.2
Min nTPM: 49.8
Sample A Female 80.2
Sample B Female 49.8
Sample C Male 74.6
Sample D Male 57.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.0
Samples: 4

Max nTPM: 39.9
Min nTPM: 19.9
Sample A Male 22.8
Sample B Male 19.9
Sample C Female 39.9
Sample D Female 29.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
81654139 Antisense, RP_090205_01_B05, Mouse strain C57BL/6J (56 days, male) 3.4

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